Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0994 ATGTCTTCTCAGTCGCCGGAAAGTGACGTCATAGCACCGACACCGGGAGCGTTCAGGCTCCGGTGGGACGTGTTCCTAAGCTTCAGAGGGGCCGACACGCGCGGCGCCATCACGAAGGGCCTCCACGAGTCTTTGCAGGCGCGTGGGATTCGCGTGTTCCTCGACGACGTCGGGTTGGAGCGTGGGGAAGAGATAGCGCGTGGCCTGATGAAGGCCATCGATGACTCAGCGGCGTTCATTGTGATCATTTCTGAAAACTACGCTTCTTCGCATTGGTGTCTGGAGGAACTCGCCAAGATTCGCGAGAGCCGGAGGCTGGTCTTGCCCGTTTTCTACCGGGTCGACCCGTCGCAGGTCCGACACCAAACGGGTCCCTTCGAAGCGGGTTTCGCCTCGCATCAACGAAGGTTTGGGGAAAATAAGGTTTCCAAGTGGAGGGAGGCTTTGAAGAAAGTAGGTGGAGTTGCTGGTTGGGTTTTTAACGACAGTGAGGAAGATAACCTGATTCGGCTTTTGGTGCAAAGGGTAATGAAGGAGCTGAGTAATACTCCTTTGGGTGCGCCTGAGTTTGCAGTGGGGCTTGATGAACGTGTTGAGAAGGTGATGAATGTGTTACAAGTTCAATCCAATGGGGTCAAGGTTTTGGGATTGTATGGGATGGGTGGGGTTGGTAAGACAACCCTAGCCAAGGCACTTTTCAATGCCCTTGTCAATCGTTTTGAGCATCGTTGCTTCATTTCCAATGTCAGAGAAGTTTCATCTAAACATGATGGTTTGGTTTCCCTTCAAAGCAAAATCATTAAAGATCTTTTCCCTGGGGCGGGGTCTCCCCCCATCAGTGATGTCAATGTTGGTATTTCTGCTATCAAAGGACGAGTTAGTGAGAATCGAGTTTTACTAGTCttggatgatgttgatgatGTAAAGCAGCTTGATGCTTTGATTGGTAAGAGGGAATTGTTTTATGATGGAAGCCGTGTGATAATCACCACAAGGGATACAAAAGTTCTACCCGAAAGGCATGTAAATGAGTTATATGAAATTAGGGAATTGTACTCTTCTGAAGCTCTAGAGTTGTTCAGTTACCATGCACTGCGAAGAAATAAACCGCCCGAAGATTTTCTGAATCTGTCAGAGAAGATAGTGTCTCTGACGGGAAGAATGCCTTTGGCTCTGGAAGTGTTTGGTTCATTTTTGTTTGGTAAGAGGAGGGTGGAGGAATGGGAGGATGCTGTGGAGAAACTGAGACTAATTCGCCCTCAGCATCTTCAGGATGTGTTGAAGATAAGTTATGATGGGTTAGATGAAGAAGAGAAGTGTATATTCCTTGATATTGCTTGTTTGTTTGTCCAAATGGGTATGAAGCGTGATGATGCGATTGATGTGTTAAGAGGTTGTGGTTATAGGAGTGAAATTGCGATCACGGTACTTGTACAGAAATGCTTAATCAAATTCACTGATCAGGACAATATCCTGGGGATGCATGATCAAATTAGAGACATGGGTAGGCAAATTGTTATAGATGAAAGCCTTGTCGATCCTGGCATGCGTAGTAGACTGTGGGATCGTGCAGAAAATCACGGCTGTTTTGAAGGGACACAAGGATACATCAAACAAAGCCTTAAGAAATATCTCCAACCTCAAGCAGAGAAAAACAAAGAGGTTATACTTCATACGAAATCCTTTGAACCAATGATTAATCTGAGACAGCTTCAGATCAATAATCTGAAATTAGAAGGCAACTTTCTTCCAGCTGAACTGAAGTGGCTACAGTGGCAAGGATGCCCTTTAGAACGCCTCCCTTTGAGAACTTGGCCACGAGAGCTGGCTGTCCTTGATCTAAAAAACAGCAACAAAATAGAGATTTTGTGGGGATGGAATGTTTACAAGGTGCCAGAGAACTTAATGGTCTTGAACCTCTCCTACTGCACCAAACTCACTGTTATCCCTGATTTATCTGGGTGTCAACGTCTAGAGAAGATTGATCTGGAGAACTGCATTAATCTAACTAAGATTCATGAATCAATTGGCAGTTTGAGTACCTTGCGTAGTTTAAATTTGACGCGTTGTTCAAGCCTTATCAACCTTCCCCTTGATGTCTCAGGGCTAAAAAATCTAGAGAGACTTTTTCTTTCCGGCTGCTCCCAGTTAAAATCATTACCAGAAAACATAGGAAGCCTGAAATCTTTGAAAGCACTTCATGCTGATGACACGGCTATAGCAGAGTTGCCCCAGTCCATTTTTCGCCTCACCAAACTTGAACGGCTTGTTTTAGAAGGTTGCCAACATTTGAGAAGGCTGCCTAGTTGTATAGGACTTCTATGTTCTTTGCAAGAATTATCTCTATACCGGTCTGGATTAGAAGAATTACCTGACTCTGTTGGATCATTGAATAACCTTGAGAGACTCAATTTGATGTGGTGTGAATCTCTCACTGTAATTCCTGATTCTATATGCAATCTCATATCATTGACAGAACTTTTGTTTGATGGAACTGCAATTAAAGAACTCCCTTATAGCATTGGTTCTTTATCTTACCTCAGGGAGTTGTCAGTTGGAAACTGTAAATTTCTCACTATATTGCcaacttcaattaaaaatttggcCTCAGTTGTTGAGCTTCAGTTAAATGGAACAGCCATCACATATTTGCCAGATGAGATCGGTGAGATGAAACTACTGAGGAAACTTGAGATGATGAATTGTAAATGTCTTGAATATTTACCAGAATCTATTAGCCATCTAGCATCTCTTACTACACTGAACATGGTCAATGGAAATATCAGGGAATTGCCAGAGTCCACTGGATTGCTAGAAAATCTTGTGACCTTAAGGTTGAACGAATGTAAAATGCTCAGAAAGCTTCCAGCTTCTATAGGAAATTTGAAATCTCTATATCACTTTTATATGGAGAAAACGGATGTGTCAAACGTACCTGAAAGCTTTGGGATGCTCTCAAGTTTGAGAACACTGAGAATGGCAAACAGCCCTGATTTAAATCCCAATGAAAATAGCTTCCTTGCAGAACCTGAAGAGAACCCCAGCTCTTTTGTACTAACATCTTCCTTCTGCAATCTGACCTTACTAACTGAGCTTGACGCTCAAGCCTGGAGAATATCTGGGAAAATTCCAGATGAATTTGAGAAGTTATCACAATTAGAGACTTTAAATTTGGGCCAGAATAATTTTCACAGCCTTCCTTCCAGCTTGAAGGGCCTTTCTATTCTCAAGGTGCTTTCACTGCCAAACTGCACTCAGTTGATCTCTCTCCCCTCACTTCCTTCAAGCTTGATTGAGCTGAATCTTGAAAACTGTTCTGCACTAGAAACTATCCATGACATGTCAAATTTAGAGAGCCTGCAGGAGTTGAAACTCACAAACTGTGTAAAAGTGGAGGATATTCCTGGTCTTGAAGGCTTGAAGTCCTTGAGAAGGTTGTACCTTAGTGATTGCATTGCATGCTCCTCACAAATACGCAAGAGACTTTCGAAGGTGGCGTTGAGGAATTTCCAGAACTTGAGCATGCCAGGAGGCAAATTACCTGAATGGTTTTCAGGACAAACTGTCAGCTTTTCCAAGCCTAAAAATCTTGAGCTAAAAGGTGTaattgttggtgttgttctttCAATCAACCATAACATTGATATACCTAATATGAAGCGAGATCGTATGCCTAGCGTGATTGATGTTCTAGCAAATGTTCTCAAACTAGGCAAAAGTCCATTTAGTACAACGTTAAACATCCGTGGGGTGCCAAGGACAGACGAAGAACACATACACTTGTGTAGGTTCCATGATTACCATCAGTTGATAGCCTTTTTAAAAGATGCTGATACATTTTGTGTGAGTAAGAGAAATCCACCTTTTGATAAGGGGTTGgagttaaaaaaatgtggggTTCATTTAATCTTTGAAGGGGACGATGATTATGATGGAGACGAAGGATCATTGGACAAAGGCCTACAATCTGTCTCGGAAAAATTGGCCAATTTTTTCAACACTTACGAAGATGGTGGTCCTATCTACCAATAA 4032 0.4216 MSSQSPESDVIAPTPGAFRLRWDVFLSFRGADTRGAITKGLHESLQARGIRVFLDDVGLERGEEIARGLMKAIDDSAAFIVIISENYASSHWCLEELAKIRESRRLVLPVFYRVDPSQVRHQTGPFEAGFASHQRRFGENKVSKWREALKKVGGVAGWVFNDSEEDNLIRLLVQRVMKELSNTPLGAPEFAVGLDERVEKVMNVLQVQSNGVKVLGLYGMGGVGKTTLAKALFNALVNRFEHRCFISNVREVSSKHDGLVSLQSKIIKDLFPGAGSPPISDVNVGISAIKGRVSENRVLLVLDDVDDVKQLDALIGKRELFYDGSRVIITTRDTKVLPERHVNELYEIRELYSSEALELFSYHALRRNKPPEDFLNLSEKIVSLTGRMPLALEVFGSFLFGKRRVEEWEDAVEKLRLIRPQHLQDVLKISYDGLDEEEKCIFLDIACLFVQMGMKRDDAIDVLRGCGYRSEIAITVLVQKCLIKFTDQDNILGMHDQIRDMGRQIVIDESLVDPGMRSRLWDRAENHGCFEGTQGYIKQSLKKYLQPQAEKNKEVILHTKSFEPMINLRQLQINNLKLEGNFLPAELKWLQWQGCPLERLPLRTWPRELAVLDLKNSNKIEILWGWNVYKVPENLMVLNLSYCTKLTVIPDLSGCQRLEKIDLENCINLTKIHESIGSLSTLRSLNLTRCSSLINLPLDVSGLKNLERLFLSGCSQLKSLPENIGSLKSLKALHADDTAIAELPQSIFRLTKLERLVLEGCQHLRRLPSCIGLLCSLQELSLYRSGLEELPDSVGSLNNLERLNLMWCESLTVIPDSICNLISLTELLFDGTAIKELPYSIGSLSYLRELSVGNCKFLTILPTSIKNLASVVELQLNGTAITYLPDEIGEMKLLRKLEMMNCKCLEYLPESISHLASLTTLNMVNGNIRELPESTGLLENLVTLRLNECKMLRKLPASIGNLKSLYHFYMEKTDVSNVPESFGMLSSLRTLRMANSPDLNPNENSFLAEPEENPSSFVLTSSFCNLTLLTELDAQAWRISGKIPDEFEKLSQLETLNLGQNNFHSLPSSLKGLSILKVLSLPNCTQLISLPSLPSSLIELNLENCSALETIHDMSNLESLQELKLTNCVKVEDIPGLEGLKSLRRLYLSDCIACSSQIRKRLSKVALRNFQNLSMPGGKLPEWFSGQTVSFSKPKNLELKGVIVGVVLSINHNIDIPNMKRDRMPSVIDVLANVLKLGKSPFSTTLNIRGVPRTDEEHIHLCRFHDYHQLIAFLKDADTFCVSKRNPPFDKGLELKKCGVHLIFEGDDDYDGDEGSLDKGLQSVSEKLANFFNTYEDGGPIYQ 1343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0994 1343 Gene3D - 180 344 IPR027417 -
Ssu5g0994 1343 PANTHER TMV RESISTANCE PROTEIN N-LIKE 19 525 - -
Ssu5g0994 1343 PANTHER TMV RESISTANCE PROTEIN N-LIKE 540 1292 - -
Ssu5g0994 1343 SMART till_3 21 155 IPR000157 GO:0007165
Ssu5g0994 1343 SUPERFAMILY L domain-like 494 902 - -
Ssu5g0994 1343 SMART LRR_typ_2 915 938 IPR003591 -
Ssu5g0994 1343 SMART LRR_typ_2 1050 1072 IPR003591 -
Ssu5g0994 1343 SMART LRR_typ_2 774 797 IPR003591 -
Ssu5g0994 1343 SMART LRR_typ_2 727 750 IPR003591 -
Ssu5g0994 1343 SMART LRR_typ_2 703 726 IPR003591 -
Ssu5g0994 1343 SMART LRR_typ_2 868 891 IPR003591 -
Ssu5g0994 1343 SMART LRR_typ_2 821 844 IPR003591 -
Ssu5g0994 1343 SUPERFAMILY L domain-like 857 1175 - -
Ssu5g0994 1343 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 445 IPR027417 -
Ssu5g0994 1343 Pfam NB-ARC domain 196 416 IPR002182 GO:0043531
Ssu5g0994 1343 Gene3D Ribonuclease Inhibitor 548 735 IPR032675 -
Ssu5g0994 1343 Gene3D Ribonuclease Inhibitor 1009 1214 IPR032675 -
Ssu5g0994 1343 Gene3D Ribonuclease Inhibitor 834 1007 IPR032675 -
Ssu5g0994 1343 Gene3D - 19 179 IPR035897 -
Ssu5g0994 1343 SUPERFAMILY Toll/Interleukin receptor TIR domain 19 158 IPR035897 -
Ssu5g0994 1343 Gene3D - 351 435 IPR042197 -
Ssu5g0994 1343 SMART LRR_CC_2 655 682 IPR006553 -
Ssu5g0994 1343 SMART LRR_CC_2 891 918 IPR006553 -
Ssu5g0994 1343 SMART LRR_CC_2 1117 1146 IPR006553 -
Ssu5g0994 1343 SMART LRR_CC_2 797 824 IPR006553 -
Ssu5g0994 1343 SMART LRR_CC_2 844 871 IPR006553 -
Ssu5g0994 1343 PRINTS Disease resistance protein signature 214 229 - -
Ssu5g0994 1343 PRINTS Disease resistance protein signature 677 693 - -
Ssu5g0994 1343 PRINTS Disease resistance protein signature 292 306 - -
Ssu5g0994 1343 PRINTS Disease resistance protein signature 385 399 - -
Ssu5g0994 1343 Gene3D Ribonuclease Inhibitor 737 833 IPR032675 -
Ssu5g0994 1343 Pfam TIR domain 22 183 IPR000157 GO:0007165
Ssu5g0994 1343 ProSiteProfiles TIR domain profile. 20 180 IPR000157 GO:0007165
Ssu5g0994 1343 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 525 IPR044974 GO:0006952
Ssu5g0994 1343 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 540 1292 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0994 Ssu-Chr5 31415870 31424260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0994 22 894 WRKY Transcription Factor Family AT4G12020 29.856 6.36e-84 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0994 - - gmx:100786934 2135.15