Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0992 ATGGGAGATGTGGCTAAGGATCTTGCAGCTGGGACTGTTGGAGGGGCAGCACAGTTGATATGTGGACACCCCTTTGACACTATCAAGGTCAAGCTCCAAAGCCAGCCTGCACCACTCCCTGGTCAGCTTCCCAAGTATTCTGGTGCATTTGATGCTGTCAAGCAGACATTAGCAGCTGAAGGACCAAGgggtttatacaaaggtatggGTGCCCCACTTGCTACAGTAGCAGCCTTCAATGCTGTCCTGTTTACAGTGAGGGGACAAATGGAAACATTAGTGAGGTCCCATCCTGGTGCCCCCCTCACAGTGAATGAGCAGGTTGTTTGTGGAGCTGGAGCTGGAGTTTCTGTTTCCATTCTTGCTTGCCCAACTGAATTGATCAAATGCAGGTTGCAAGCACAAAGTGCTCTTGCTGGCTCCGGAACAGCTACTGTGGCTGTTAAGTATGGAGGACCCATGGATGTGGCCAGGCATGTTCTCAGGTCAGAAGGGGGCATGAGAGGTCTTTTCAAGGGCTTGGTTCCCACTATGGGGCGTGAGATACCTGGAAATGCTATAATGTTTGGTGTATATGAAGCATTAAAGCAAAAGTTTGCAGGAGGCACTGATACTTCTGGCCTAAGTAGAGGTTCTCTCATTGTTGCTGGGGGCTTGGCTGGAGCTTCCTTCTGGTTCTTTGTTTACCCAACTGATGTTATCAAGAGTGTGATTCAAGTAGATGATTACAGAAACCCAAAATTTTCTGGTTCATTTGATGCATTCAGAAAGATTCGAGCCTCAGAGGGGTTGAAAGGCTTGTATAAGGGTTTTGGTCCTGCAATGGCCAGAAGTGTTCCTGCAAATGCAGCATGCTTCTTGGCATATGAGATGACAAGATCAGCTCTGGGATGA 894 0.4732 MGDVAKDLAAGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQLPKYSGAFDAVKQTLAAEGPRGLYKGMGAPLATVAAFNAVLFTVRGQMETLVRSHPGAPLTVNEQVVCGAGAGVSVSILACPTELIKCRLQAQSALAGSGTATVAVKYGGPMDVARHVLRSEGGMRGLFKGLVPTMGREIPGNAIMFGVYEALKQKFAGGTDTSGLSRGSLIVAGGLAGASFWFFVYPTDVIKSVIQVDDYRNPKFSGSFDAFRKIRASEGLKGLYKGFGPAMARSVPANAACFLAYEMTRSALG 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0992 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 2 93 IPR018108 -
Ssu5g0992 297 Gene3D Mitochondrial carrier domain 2 296 IPR023395 -
Ssu5g0992 297 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 1 297 - -
Ssu5g0992 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 102 198 IPR018108 -
Ssu5g0992 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 208 295 IPR018108 -
Ssu5g0992 297 SUPERFAMILY Mitochondrial carrier 3 290 IPR023395 -
Ssu5g0992 297 Pfam Mitochondrial carrier protein 4 95 IPR018108 -
Ssu5g0992 297 Pfam Mitochondrial carrier protein 214 296 IPR018108 -
Ssu5g0992 297 Pfam Mitochondrial carrier protein 103 200 IPR018108 -
Ssu5g0992 297 PANTHER CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN 1 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0992 Ssu-Chr5 31405069 31406396 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0992 22 296 Antiporters AT1G79900 33.452 1.26e-41 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0992 K15109 - gmx:100791908 567.77