Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0990 ATGACGGAGTACCGCTCGCCGCCGACAATGAATCTCTGGACCGACGACAACTCTTCCGTGATGGAGGCCTTCATGAGCTCGTCCGACCTCTCCTCCCTGTGGCTGCCCACGCCGCAATCCGCCGCATCAACCACCACTCCGGGACCCGACACGAGCCGACCTCCGCCGCCGCAATCCCAGTCTCTCCTCAACCAGGAGACCCTACAACAGCGCTTGCAGACGCTAATCGAAGGTGCTAGAGAGAGCTGGACCTACGCAATTTTCTGGCAGTCTTCTTATGACTACTCTTCCGGCGCTTCCCTTCTCGGTTGGGGCGATGGCTACTACAAGGGCGAGGAGGACAAAGGAAAGGGCAAAGCCCCCAAAACGATGTCGTCAGCGGAGCAGGACCACCGCAAGAAGGTTCTCCGCGAGCTCCATTCCCTAATTTCCGGTCCTTCCGCTTCCGTTGATGATGTCGACGAAGAGGTCACCGACACAGAGTGGTTCTTTCTGGTCTCCATGACTCAGTCCTTTGTCAACGGCAGCGGCCTGCCGGGCCAGGCTTTCTTTAGTTCGAGCCCCGTTTGGGTGACCGGGGTGGACCGGTTATCCGAATCGGCCTGCGAACGGGCCCGGCAGGGGCAGGTGTTTGGGCTTCAGACTCTGGTTTGCATACCGTCCGCAAACGGCGTCGTCGAGCTGGCCTCCACGGAGTTGATTTTCCAGAACCCTGATCTGATGAACAAGGTGCGGGATTTGTTCAACTTCAACAACCCCGACGTGAGCTCGTGGCCGTTGAACTGTGTCGCAACCGATCAGGGCGAGAACGACCCTTCCTCGCTCTGGCTCAACCCTTCCTCCGTCGAAATCAGGGATTCCGCTAACACCGTCACGCCGGCTTCAGCGAATGCAACAGTTAACAAGACGTTGCACTTCGAAACCCCTGGCTCCAGCACTCTAACCGAAGCCCCTAGTGCTGTTCACGTCCCCAACGCTCACCAGCAGTCGCAGAACAAGGGTTTCTTCCCGAGGGAATTGAACTTCTCGGGTTCCCTGAAGCCTGAATCCGGTGAATTTCTGAGCTTCGGGGAGAGCAAGAAGAGTTCTTACAATGGGAATTTCTTTCCCGGGGTTGCCACTGAGGAGAAAAACAAGAGGAGGTCCCCTGTTTCAAGGAGCAGCATTGACGATGAAATGCTGTCGTTCACTTCCGGCGTGATCCTGCCGGCTTCGAATATGAAATCTGGTAgtggtggcggcggcggcggtgGTGATTTTGATCACTCGGATCTGGAAGCGTCCGTGGTGAAGGAGGCCGACAGCGGCAGAGTGGTGGAACCGGAGAAGCGGCCCCGGAAGAGGGGGCGGAAGCCGGCGAATGGCAGAGAGGAGCCGTTGAATCACGTGGAAGCGGAGAGGCAGAGGAGAGAAAAGCTGAATCAAAGGTTCTACTCGCTTCGGGCGGTGGTTCCCAACGTGTCGAAGATGGACAAGGCATCGCTTTTGGGCGACGCCATATCCTACATAAACGAGCTCAAGTCCAAGCTTAATGGGCTGGAATCGGAGAAAGGGGAATTGGAGAAGCAATTGGATTTGGCCAAGAACGAGCTCGAGCTCGCGACTGAAAAcccaccacctccaccacctgcGCCTGATAGTGAAGCGAAGAAAACGACGACCAAGCTGATTGATTTGGATATAGACGTTAAGATCATCGGTTGGGATGCGATGATTAGGATCCAATGCAGCAAAAAGAACCACCCTGCGGCAAGGTTGATGGCGGCTTTGAAGGAGCTGGACCTGGAAGTGCATCATGCCAGCGTGTCCGTGGTGAATGATTTGATGATCCAACAGGCCACGGTCAACATGGGAAACCGCTTTTACACGCAGGAGCAGCTCCTGTTGGCACTCTCGTCCAAAGTTGGCGATGCACGATAA 1920 0.5453 MTEYRSPPTMNLWTDDNSSVMEAFMSSSDLSSLWLPTPQSAASTTTPGPDTSRPPPPQSQSLLNQETLQQRLQTLIEGARESWTYAIFWQSSYDYSSGASLLGWGDGYYKGEEDKGKGKAPKTMSSAEQDHRKKVLRELHSLISGPSASVDDVDEEVTDTEWFFLVSMTQSFVNGSGLPGQAFFSSSPVWVTGVDRLSESACERARQGQVFGLQTLVCIPSANGVVELASTELIFQNPDLMNKVRDLFNFNNPDVSSWPLNCVATDQGENDPSSLWLNPSSVEIRDSANTVTPASANATVNKTLHFETPGSSTLTEAPSAVHVPNAHQQSQNKGFFPRELNFSGSLKPESGEFLSFGESKKSSYNGNFFPGVATEEKNKRRSPVSRSSIDDEMLSFTSGVILPASNMKSGSGGGGGGGDFDHSDLEASVVKEADSGRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYINELKSKLNGLESEKGELEKQLDLAKNELELATENPPPPPPAPDSEAKKTTTKLIDLDIDVKIIGWDAMIRIQCSKKNHPAARLMAALKELDLEVHHASVSVVNDLMIQQATVNMGNRFYTQEQLLLALSSKVGDAR 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0990 639 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 68 248 IPR025610 -
Ssu5g0990 639 MobiDBLite consensus disorder prediction 35 61 - -
Ssu5g0990 639 Pfam Helix-loop-helix DNA-binding domain 461 506 IPR011598 GO:0046983
Ssu5g0990 639 Coils Coil 503 537 - -
Ssu5g0990 639 MobiDBLite consensus disorder prediction 403 467 - -
Ssu5g0990 639 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 460 526 IPR036638 GO:0046983
Ssu5g0990 639 PANTHER TRANSCRIPTION FACTOR MYC2 12 636 - -
Ssu5g0990 639 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 457 506 IPR011598 GO:0046983
Ssu5g0990 639 PANTHER MYC 12 636 IPR045084 GO:0003700|GO:0006355
Ssu5g0990 639 MobiDBLite consensus disorder prediction 424 467 - -
Ssu5g0990 639 CDD bHLH_AtAIB_like 454 530 - -
Ssu5g0990 639 Gene3D - 449 536 IPR036638 GO:0046983
Ssu5g0990 639 SMART finulus 463 512 IPR011598 GO:0046983
Ssu5g0990 639 MobiDBLite consensus disorder prediction 370 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0990 Ssu-Chr5 31152928 31154847 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0990 1 636 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 57.295 0.0 640
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu5g0990 bHLH-MYC_N 1.3e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0990 K13422 - gmx:100790854 954.896