Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0985 ATGGGAAGGGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAATCGCCAAGTAACTTTCTCCAAAAGGAGAGCTGGGTTACTCAAGAAAGCACACGAGATCTCTGTGCTCTGTGACGCTGAGGTTGCTTTGATTGTCTTCTCCCACAAAGGAAAGCTCTTTGAATATGCCACTGATTCTTGCATGGAGAAGATACTGGAACGCTATGAAAGGTATGCCTATGCAGAGAGACAGCTTGTTGCAAATGATTCCGAGTCACAGGGAAATTGGACCATTGAGTATACTAGACTCAAGGCAAAGATTGACCTTTTGCAGAGAAACCATagGCACTATATGGGAGAAGATTTAGGTTCAATGAGCCTCAAAGAGCTTCAGAGTCTGGAGCAGCAGTTAGACACTGCTCTCAAACAAATTCGTACCCACAGAAACCAACTCATGTACGAGTCCATTTCGGAGCTTCAGAAGAAGGAGAAAGTGATACAGGAGCAGAATAACATGCTTGCAAAGAAGATcaaggagaaagaaaaggttGCAGCGCAGCAGGCACAATGGGAGCATCCAAACCACGGAGTTAATGCATCTTTCTTGCTACCACAGCCACTTTTGAACATAGGTGGCAATTACCGTGAGGAAGCACCAGAAATAGGGAGGAATGAGCTTGACCTGACTCTGGAACCATTGTATTCCTGCCACCTTGGATGCTTTTGA 711 0.4416 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATDSCMEKILERYERYAYAERQLVANDSESQGNWTIEYTRLKAKIDLLQRNHRHYMGEDLGSMSLKELQSLEQQLDTALKQIRTHRNQLMYESISELQKKEKVIQEQNNMLAKKIKEKEKVAAQQAQWEHPNHGVNASFLLPQPLLNIGGNYREEAPEIGRNELDLTLEPLYSCHLGCF 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0985 236 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Ssu5g0985 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ssu5g0985 236 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Ssu5g0985 236 Coils Coil 151 181 - -
Ssu5g0985 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu5g0985 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu5g0985 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu5g0985 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 213 - -
Ssu5g0985 236 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu5g0985 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ssu5g0985 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ssu5g0985 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ssu5g0985 236 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu5g0985 236 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Ssu5g0985 236 Coils Coil 125 145 - -
Ssu5g0985 236 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0985 Ssu-Chr5 30979318 30985300 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0985 1 236 MADS-box Gene Family AT1G26310 63.780 1.43e-107 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ssu5g0985 K-box 4.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0985 K09264 - gmx:100810129 446.817