Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0980 ATGAGTTTTCAGGACATCGAGGCTGGCCGGCCCTTCGGTGCGAGGCGCGGGTTGATCAATGGGAAGCAAGACCCTACGCAAGCGGTGGCTGCTGGAATATTCCAGATCAACACCGCCGTGTCCACGTTTCAGAGACTCGTCAACACCCTCGGAACCCCCAAAGACACCCCCGAGCTCCGTGAGAAGCTCCACAAGACAAGACTACATATTGGGCAATTGGTGAAGGATACATCAGCTAAACTTAAGCAAGCTAGTGACATTGATCACCATGCTGAAGTTAATGCAAGCAAGAAGATTGCAGATGCTAAACTTGCGAAAGATTTTCAGGCTGTTTTGAAAGAGTTTCAGAAGGCACAACGTCTTGCAGCTGAAAGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCAAGCTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCGTGCCCTACTTGTGGAATCAAGGAGGCAGGAAgtgttatttttagataatgAGATTGCCTTCAATGAGGCTATCATTGAGGAAAGGGAGCAAGGCATTCAAGAAATACAGCAGCAAATTGGTGAAGTTAATGAGATCTTCAAAGATCTTGCTGTGCTTGTCCATGAGCAAGGAGCCATGATTGaTGATATTGGCTCCAACATTGAGAACTCCCATGCAGCAACAGCACAAGCAAAATCTCAACTTGCAAAAGCTTCAAAAACCCAAAGATCAAATTCGTCTttgacATGCTTGCTTTTGGTGATATTTGGGATTGTGCTTCTCATCGTGATCATAGTTCTTGCTGCTTAG 822 0.4501 MSFQDIEAGRPFGARRGLINGKQDPTQAVAAGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASDIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTASEVDVGSDKSPEQRALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIENSHAATAQAKSQLAKASKTQRSNSSLTCLLLVIFGIVLLIVIIVLAA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0980 273 SUPERFAMILY t-snare proteins 23 235 IPR010989 GO:0016020|GO:0016192
Ssu5g0980 273 SMART SynN_4 14 127 IPR006011 GO:0016020
Ssu5g0980 273 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Ssu5g0980 273 PANTHER SYNTAXIN 2 272 IPR045242 -
Ssu5g0980 273 ProSitePatterns Syntaxin / epimorphin family signature. 186 225 IPR006012 GO:0005484|GO:0006886|GO:0016020
Ssu5g0980 273 CDD SNARE_Qa 200 241 - -
Ssu5g0980 273 Gene3D - 174 273 - -
Ssu5g0980 273 SMART tSNARE_6 175 242 IPR000727 -
Ssu5g0980 273 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 180 242 IPR000727 -
Ssu5g0980 273 Pfam SNARE domain 217 268 IPR000727 -
Ssu5g0980 273 PANTHER SYNTAXIN OF PLANTS PROTEIN 2 272 - -
Ssu5g0980 273 CDD SynN 23 148 IPR006011 GO:0016020
Ssu5g0980 273 Gene3D - 20 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0980 Ssu-Chr5 30649482 30652905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0980 1 261 SNARE and Associated Proteins AT5G46860 78.927 4.94e-149 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0980 - K08488 gsj:114391232 436.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1963 2 72228012 72231585 Ssu5g0980 5 30649482 30652905 PCT