Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu5g0979 | ATGGTGGATGACCCTTCGACGGACTCGATCGTGTCGTGGAGCCCAACGAACAATAGCTTCGTGGTTTGGAATCCTCCCGAGTTCGCCAGAGACCTCTTGCCCAAACACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAGTTAAACACCTACGGTTTTAGGAAGGTAGATCCAGATCGCTGGGAATTTGCAAATGAGGGATTTTTAAGGGGTCAAAAGCACTTGCTTAAGACAATAACTCGGCGAAAACCTGCCCATGGTCATAATCATCAGCAGGCACAGCAATCACATGGACAGAGTTCATTGGTTGGGGCTTGTGTAGAAGTTGGGAAGTTTGGACTTGAGGAAGAGGTTGAGATTCTCAAGAGGGATAAGAATGTGCTCATGCAAGAGCTTGTGAGATTGAGGCAGCAGCAACAGGCTACTGATAACCAGCTGCAGACAATGGTTCAGCGCCTTCAGGGAATGGAGCAACGACAGCAACAAATGATGTCATTCCTTGCAAAGGCTGTTCAGAGCCCTGGTTTCTTAGCTCAATTTGTACAACAGCAAAATGAGAGTAATAGGCGCATAACAGAGGCAAACAAAAAACGTCGGCTTAAGCAGGAAGGTATTGGTGAAATGGAACATACGGCTTCTTCTGATGGGCAAATTGTTAAATATCAACCTCTGATAAATGAAGCAGCAAAAGCAATGCTAAGGCAGATAATGAAGTTGGATACTTCTCGGCTAGAATCTTTTAGTAATAACCCTGATAATCACTTGATTGGTGATCATTCATCATCATCCAGTGCAGTGGACAGGGGAAACCCTTTGAGCAGGACTTCTGGTGTAACACTTCAAGAGGTCCCTCCGACTGCAGTGCAATCTTGTCGCCTTCCATGTGCAACAGGGACTCAAGGGCATGGCCCTTCAACCGGAAAATCTGAGATTCTATCTTCTCCCCAAGTTGCAGCCTGTGAAGAAGTTATGAAAGCTCAGTACCCTAATATAAATGTTTCGGTTGGAGAATCTAATGCACCTGCTCTCCCTGTTACTCAAACAGATGAAATCATGCCGGACCTCTCCCCAGTACCAGATATAGTGGCAGGAAATATTCTTGATATtcctcaagaaaaatatatggtATCTGAGACAGGTGGGGAGGGATATATGGACCCTACTTCATTGGGAATGAATGGGTCATTGCCCATTGATTTTGATAGTATTTCACCTGAAACAGACATTGATGATTTGTTGAGCAATCCGCACTTTTGGGATGATATTGTGCGAACTCCAGTGTCAGAGGAGATTGAGACGAATGTTGCTGAAGTATCCAAGGAGAATGAGGTGCAGCCAATCGAAAATGGATGGGACAAGTCTCAACATATGGACCAACTTACTGAGCAGATGGGCCTACTTTCTTCTGATGCAAAAAGGATTTGA | 1428 | 0.4454 | MVDDPSTDSIVSWSPTNNSFVVWNPPEFARDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTITRRKPAHGHNHQQAQQSHGQSSLVGACVEVGKFGLEEEVEILKRDKNVLMQELVRLRQQQQATDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFLAQFVQQQNESNRRITEANKKRRLKQEGIGEMEHTASSDGQIVKYQPLINEAAKAMLRQIMKLDTSRLESFSNNPDNHLIGDHSSSSSAVDRGNPLSRTSGVTLQEVPPTAVQSCRLPCATGTQGHGPSTGKSEILSSPQVAACEEVMKAQYPNINVSVGESNAPALPVTQTDEIMPDLSPVPDIVAGNILDIPQEKYMVSETGGEGYMDPTSLGMNGSLPIDFDSISPETDIDDLLSNPHFWDDIVRTPVSEEIETNVAEVSKENEVQPIENGWDKSQHMDQLTEQMGLLSSDAKRI | 475 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu5g0979 | 475 | Pfam | HSF-type DNA-binding | 1 | 83 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Ssu5g0979 | 475 | MobiDBLite | consensus disorder prediction | 193 | 209 | - | - | |
Ssu5g0979 | 475 | MobiDBLite | consensus disorder prediction | 251 | 282 | - | - | |
Ssu5g0979 | 475 | PANTHER | HEAT SHOCK TRANSCRIPTION FACTOR | 1 | 461 | IPR027725 | - | |
Ssu5g0979 | 475 | PANTHER | HEAT STRESS TRANSCRIPTION FACTOR A-1 | 1 | 461 | - | - | |
Ssu5g0979 | 475 | SMART | hsfneu3 | 1 | 83 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Ssu5g0979 | 475 | ProSitePatterns | HSF-type DNA-binding domain signature. | 33 | 57 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Ssu5g0979 | 475 | SUPERFAMILY | "Winged helix" DNA-binding domain | 1 | 83 | IPR036390 | - | |
Ssu5g0979 | 475 | Coils | Coil | 112 | 139 | - | - | |
Ssu5g0979 | 475 | Gene3D | - | 1 | 84 | IPR036388 | - | |
Ssu5g0979 | 475 | PRINTS | Heat shock factor (HSF) domain signature | 32 | 44 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Ssu5g0979 | 475 | PRINTS | Heat shock factor (HSF) domain signature | 45 | 57 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Ssu5g0979 | 475 | MobiDBLite | consensus disorder prediction | 193 | 213 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu5g0979 | Ssu-Chr5 | 30467275 | 30471702 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu5g0979 | 1 | 469 | HSF | AT1G32330 | 52.632 | 4.82e-154 | 445 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HSF | Ssu5g0979 | HSF_DNA-bind | 3.7e-29 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu5g0979 | K09419 | - | gmx:732544 | 810.061 |