Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0979 ATGGTGGATGACCCTTCGACGGACTCGATCGTGTCGTGGAGCCCAACGAACAATAGCTTCGTGGTTTGGAATCCTCCCGAGTTCGCCAGAGACCTCTTGCCCAAACACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAGTTAAACACCTACGGTTTTAGGAAGGTAGATCCAGATCGCTGGGAATTTGCAAATGAGGGATTTTTAAGGGGTCAAAAGCACTTGCTTAAGACAATAACTCGGCGAAAACCTGCCCATGGTCATAATCATCAGCAGGCACAGCAATCACATGGACAGAGTTCATTGGTTGGGGCTTGTGTAGAAGTTGGGAAGTTTGGACTTGAGGAAGAGGTTGAGATTCTCAAGAGGGATAAGAATGTGCTCATGCAAGAGCTTGTGAGATTGAGGCAGCAGCAACAGGCTACTGATAACCAGCTGCAGACAATGGTTCAGCGCCTTCAGGGAATGGAGCAACGACAGCAACAAATGATGTCATTCCTTGCAAAGGCTGTTCAGAGCCCTGGTTTCTTAGCTCAATTTGTACAACAGCAAAATGAGAGTAATAGGCGCATAACAGAGGCAAACAAAAAACGTCGGCTTAAGCAGGAAGGTATTGGTGAAATGGAACATACGGCTTCTTCTGATGGGCAAATTGTTAAATATCAACCTCTGATAAATGAAGCAGCAAAAGCAATGCTAAGGCAGATAATGAAGTTGGATACTTCTCGGCTAGAATCTTTTAGTAATAACCCTGATAATCACTTGATTGGTGATCATTCATCATCATCCAGTGCAGTGGACAGGGGAAACCCTTTGAGCAGGACTTCTGGTGTAACACTTCAAGAGGTCCCTCCGACTGCAGTGCAATCTTGTCGCCTTCCATGTGCAACAGGGACTCAAGGGCATGGCCCTTCAACCGGAAAATCTGAGATTCTATCTTCTCCCCAAGTTGCAGCCTGTGAAGAAGTTATGAAAGCTCAGTACCCTAATATAAATGTTTCGGTTGGAGAATCTAATGCACCTGCTCTCCCTGTTACTCAAACAGATGAAATCATGCCGGACCTCTCCCCAGTACCAGATATAGTGGCAGGAAATATTCTTGATATtcctcaagaaaaatatatggtATCTGAGACAGGTGGGGAGGGATATATGGACCCTACTTCATTGGGAATGAATGGGTCATTGCCCATTGATTTTGATAGTATTTCACCTGAAACAGACATTGATGATTTGTTGAGCAATCCGCACTTTTGGGATGATATTGTGCGAACTCCAGTGTCAGAGGAGATTGAGACGAATGTTGCTGAAGTATCCAAGGAGAATGAGGTGCAGCCAATCGAAAATGGATGGGACAAGTCTCAACATATGGACCAACTTACTGAGCAGATGGGCCTACTTTCTTCTGATGCAAAAAGGATTTGA 1428 0.4454 MVDDPSTDSIVSWSPTNNSFVVWNPPEFARDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTITRRKPAHGHNHQQAQQSHGQSSLVGACVEVGKFGLEEEVEILKRDKNVLMQELVRLRQQQQATDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFLAQFVQQQNESNRRITEANKKRRLKQEGIGEMEHTASSDGQIVKYQPLINEAAKAMLRQIMKLDTSRLESFSNNPDNHLIGDHSSSSSAVDRGNPLSRTSGVTLQEVPPTAVQSCRLPCATGTQGHGPSTGKSEILSSPQVAACEEVMKAQYPNINVSVGESNAPALPVTQTDEIMPDLSPVPDIVAGNILDIPQEKYMVSETGGEGYMDPTSLGMNGSLPIDFDSISPETDIDDLLSNPHFWDDIVRTPVSEEIETNVAEVSKENEVQPIENGWDKSQHMDQLTEQMGLLSSDAKRI 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0979 475 Pfam HSF-type DNA-binding 1 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu5g0979 475 MobiDBLite consensus disorder prediction 193 209 - -
Ssu5g0979 475 MobiDBLite consensus disorder prediction 251 282 - -
Ssu5g0979 475 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 461 IPR027725 -
Ssu5g0979 475 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1 1 461 - -
Ssu5g0979 475 SMART hsfneu3 1 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu5g0979 475 ProSitePatterns HSF-type DNA-binding domain signature. 33 57 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu5g0979 475 SUPERFAMILY "Winged helix" DNA-binding domain 1 83 IPR036390 -
Ssu5g0979 475 Coils Coil 112 139 - -
Ssu5g0979 475 Gene3D - 1 84 IPR036388 -
Ssu5g0979 475 PRINTS Heat shock factor (HSF) domain signature 32 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu5g0979 475 PRINTS Heat shock factor (HSF) domain signature 45 57 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu5g0979 475 MobiDBLite consensus disorder prediction 193 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0979 Ssu-Chr5 30467275 30471702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0979 1 469 HSF AT1G32330 52.632 4.82e-154 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Ssu5g0979 HSF_DNA-bind 3.7e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0979 K09419 - gmx:732544 810.061