Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0978 ATGATCTCAGAAATTTTCGTGGTTGCCCATGTCTATTTTGTGGCTCTTGGAAACATCAATTCCGAACCCATGCTATACATTGGAATGTTGTTTAGCATGTTTGCTTGGCACGTGGAAGATCATTATTTATACAGCGTTAATTATCATCACTGTGGAGCATCAAAAACTTGGTATGGCATTCCAGGTCATGCAGCTTTGGAATTTGAAAGGGTGGTGAGAGAACACGTGTATACTAATGATATTTTGTTAACTGGTGGGGAAGATGGAGCCTTTGATGTTCTCCTGGGAAAAACAACTCTGTTTCCACCAAATATTTTGTTGGAGCATGAAGTCCCTGTCTACAAGGCTGTTCAAAATCCGGGggattttataataactttccCCAGAGCATATCATGCCGGCTTCAGTCATGgtTTCAACTGTGGAGAAGCAGTGAATTTTGCAATTGGCGATTGGTTTCCTTTAGGGGATATTGCTAGCCAAAGATATGCACTTCTTCACAGGGTTCCTTTGCTGCCCCATGAAGAACTTTTATGCAAAGAAGCAATGCTTCTGTATGCAAGATTAGAACTTGAGGATTCAGACATTCCTTCTGAAGATTTGTTATCTCATAATTATGTTAagatttcttttgttaatttgatgCGCTTTCAACATTATGCTCGCTGGTTCTTAATGAAATCAAGGGCATGTATAAGTGTTTCTTCATATTCCCATGGTACAATTCTCTGTAGCCTCTGCAAACGGGACTCCTATGTAGCTTATGTTGACTGTGAATGTCACATGCATCCAGTATGCCTTCGCCGTGAATCTCTTGACTTCACCTGTGGGAGCAAACACACACTTTATCTTAGGGAAGATGCTACAGATATGGAAGCTGCGGCCAAGAGATTTGAGCAGGAAGTTGGAATATTGAATGAGATACTTAAGCAAATGAAAAGTGACAAAAACATGTATTCATACCCTTTGTCAAACATGTTCCAGATAGCTGAGGCAAATGGATATACACCTTATTGTGAGATGAAATTTGATTGTGTTTTCGATTTTTATACCACCCCAAAGCTGTCAACAAATAATCAAGATGAGGCGCGTGCTAactttaaattaggcattacTGATTTTGAAGAGATTTGTGAAAGAATATCCAATAATGCTTCTGAATCTTTGCGATCCCCTGCTCAGTATGAAGGCCCTAATAAATCTATGAGTAATGTCCATAGATTAAAGAAGAAGCTCATTGTGGATAACGAGAGTGATGATTCTGATTCAGGGATTTTTAGGTTAGAGCGTCCTTCTTCTCTTAAGGCAGAGAGGAGAAATGTAAGAGGTGCTATTTCTTCACCGCATTCTGAGCAGCAGGGACTCAAACAATTGAGGAAAGTCTTTAACGAAGAAAGGAGTGTGCAACCAATAGATATCAGCAAAAGCAAGGAATCGAGTTACAAATGTAGTCACGCTGTTAGTCATAAAGTTAATGGTGACATTTCCTTGAGGGACAGATTTGCAAGGGGAATAGCATTCCAATATCCGTAA 1533 0.3849 MISEIFVVAHVYFVALGNINSEPMLYIGMLFSMFAWHVEDHYLYSVNYHHCGASKTWYGIPGHAALEFERVVREHVYTNDILLTGGEDGAFDVLLGKTTLFPPNILLEHEVPVYKAVQNPGDFIITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGDIASQRYALLHRVPLLPHEELLCKEAMLLYARLELEDSDIPSEDLLSHNYVKISFVNLMRFQHYARWFLMKSRACISVSSYSHGTILCSLCKRDSYVAYVDCECHMHPVCLRRESLDFTCGSKHTLYLREDATDMEAAAKRFEQEVGILNEILKQMKSDKNMYSYPLSNMFQIAEANGYTPYCEMKFDCVFDFYTTPKLSTNNQDEARANFKLGITDFEEICERISNNASESLRSPAQYEGPNKSMSNVHRLKKKLIVDNESDDSDSGIFRLERPSSLKAERRNVRGAISSPHSEQQGLKQLRKVFNEERSVQPIDISKSKESSYKCSHAVSHKVNGDISLRDRFARGIAFQYP 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0978 510 Pfam C5HC2 zinc finger 244 293 IPR004198 -
Ssu5g0978 510 Gene3D Cupin 18 205 - -
Ssu5g0978 510 Coils Coil 295 315 - -
Ssu5g0978 510 Pfam JmjC domain, hydroxylase 24 147 IPR003347 -
Ssu5g0978 510 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 21 486 - -
Ssu5g0978 510 PANTHER LYSINE-SPECIFIC DEMETHYLASE 21 486 - -
Ssu5g0978 510 SUPERFAMILY Clavaminate synthase-like 22 180 - -
Ssu5g0978 510 SMART cupin_9 3 164 IPR003347 -
Ssu5g0978 510 ProSiteProfiles JmjC domain profile. 1 164 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0978 Ssu-Chr5 30451226 30454762 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0978 21 189 C2H2 Transcription Factor Family AT5G04240 47.337 3.76e-48 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Ssu5g0978 JmjC 2.7e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0978 - - vra:106765852 768.459