Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0972 ATGAGTGGATGGCCGTATTATACTATTTGTGGATTTAAGGTGATATGCAATGTGAGAACGGTACAAGCATTTGCAGGAGAAGAAAGAGCAGTGAGATCATACAAAGCGGCTCTGATGAACACATATAGAAATGGTCGAAAAGCAGGTTTAGCAAAGGGTCTGGGACTAGGCTCTATGCACTGTGTCCTTTTCCTATCATGGGCTCTGCTTGTTTGGTTCACTAGCATTGTTGTTCACAAGAATATCGCCAATGGTGGTGACGCTTTCACTACCATGCTCAATGTAGTCATCTCTGGCCTGTCACTTGGGCAGACAGCACCAGATATTTCTGCATTTATCAGAGCTAAGGCAGCAGCTTATCCCATTTTTGAGATGATACAGAGGGACACAATGAGCAAAGTCAGCACAGAAAATGGTCAAAAGTTAAGCCAATTGGAAGATTCCTTCAGGGAAAATTTTAGCTCTTGTAGGAGGAGTGGTTCTGGAAAGAGCACAGTTATATCATTGATTGAGCGCTTCTATGAACCACTTTCTGGCCAAATACTGTTAGATCGAAACAATATCAGGGAACTTGATCTCACATGGCTTAGACAGCAAATTGGACTGGTTAACCAAGAACCTGCACTTTTTGCTACAATCATCAGGGAGAACATACTGTACGGAAAAGATGATGCCACTCTTGAAGAAATAAATCAAGCTGTGAGGCTTTCCGATGCTCACTCTTTTATTAACAATCTTCCGGATGGATTAGATACCCAGGTTGGTGAGAGAGGGATACAATTATCAGGGGGACAGAAACAAAGGATTGCAATATCTCGTGCTATAATTAAGAACCCATCAATCCTTTTATTGGATGAAGCAACCAGTGCTCTGGATGCAGAGTCCGAGAAAAGTGTACAGGAGGCTCTTGATCGCGTCATGGTGGGTAGAACAACCGTGATAGTTGCACACAGACTTTCTACCATTAGGAACGCTGATATGATCGCTGTTACTGTAGGAGGGAAGAAGGTGGTGGAAATTGGCAATCATGAGGAACTCATTTCCAACCCAAATAATGTATATGCATCTCTTGTTCAAATCCAAGAAACAGCCTTTTCTCAAGGTCACGTTTCTTGTAACATACCATTagcattatatttatgtttatatgattattttgatTGTAACATAAGGCGCCTAGGAGAGTCATCATCCCGCTCAACAAGCTTTCGTGGTAGTTTCCGTTCAGATAAAGAATCAACTAGCCGGGCTTTTGGTGATGGAGCAGAAAATGTTGGAAGTTCAAGGCATGTCTCAGCAAGAAGACAGTATTCCATGATTGGCCCTGACTGGCTTTATGGTGTTTTTGGAACCTTGGCTTATTACATGGACTGGGATACAACACGTCATGAAGTGAAAAAAGTTGCTTTCGTCTTTTGTGGGGCAGCAGTTTTAACCATCACTGCCCATGCCATTGAACATCTTTCCTTTGGAATCATGGGGGAACGACTTACCCTTCAGGtgagagaaaaaatgttttctgCTATTTTGAAAAGTGAAATTGGCTGGTTTGATGACACAAACAACACAAGTTCTATGCTTTCATCACTTTTAGAGACTGATGCAACATTTTTAAGAACTGTAGTTGTTGATCGTTCAATGATTCTTCTGCAGAATGTTGGTCTAGTAGTTGCTTCATTTATTATTGCCTTCATGTTGAACTGGAGGATAACGCTTGTTGTCTTGGCCACATACCCTTTGATCATTAGTGGTCACATTAGCAAGGTTTCCTCTTGCTCCATATTTCAACATTACCAAACTAGTACATCTGTTTGTGTTTTAACAACTTGGGTGCCAACATTTCAGAAACTATTCATGCAAGGCTTCGGTGGTAACCTCAGCAAAGCGTATCTAAAAGCCAACATGTTGGCTGGGGAGGCTGTAAGTAATATCCGTACTGTGGCTGCGTTTTGTGCTGAACAAAAGATCCTTGACCTTTATGCTAATGAGCTTGTGGAGCCTTCCAAGCGTTCATTCAATCGGGGCCAAATTGCTGGCGTATTCTATGGCATTTCCGAGttctttattttctcatcttatGGCCTTGCCTCGTATGAATCTGTGTTGATGGGAAATGAGCTTTCTAGCTTCAAATCAATTATGAAGTcatttatggttttaattgtaACAGCACTTGCTATGGGGGAGACTTTGGCACTGGCACCTGGCCTTTTGAAAGGAAATCAAATGGTTGCATCAATTTTTGAAGTGATGGATAGAAAGACAGTAATATTGGGTGATGTTGGAGAAGAGCTGAAGACAGTGGAAGGAACAATTGGGCTAAAAAGAATCCAATTCAGCTACCTTTCAAGGCCAGATGtggttatttttaatgatttcaatCTTACAGTGCCTGCAGGGAAGAATATTGCCTTGGTCGGGCATAGTGGTTGTGGTAAAAGCTCAGTCATCTCCCTTATACTCAGATTTTATGATCCAACATCTGGAAAGGTGATGGTTGATGGAAAAGACATCAAGAAACTCAATTTGAAATCCCTTAGGAAACATATTGGTCTAGTGCAACAAGAACCGGCTCTTTTTGCAACatcaatttatgaaaatattcttTATGGAAAGGAAGGAGCCTCAGAAGCAGAAGTGATTGAAGCAGCTAAACTTGCCAATACTCACAGCTTTATCAGTGCTCTTCCTGAGGGCTACTCCACCAAAGTAGATGAAGCCACCAGTGCACTGGATTTGGAGTCGGAGCGTGTGGTGCAGCAAGCTCTAGACAAATTGATGCAGAACAGAACAACAGTTATAGTGGCACATAGGCTATCCACAATAAGAAATGCAGACCAAATAGCAGTTTTAGAGGACGGAAAGATAATTGAGCGAGGGACTCATTCAAGAGAACACAGATGGAGCATACTACAAATTAGTCAGCCTTCAACAATAACAGCAGCAGCATGTACAATAACATAA 2964 0.4052 MSGWPYYTICGFKVICNVRTVQAFAGEERAVRSYKAALMNTYRNGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIVVHKNIANGGDAFTTMLNVVISGLSLGQTAPDISAFIRAKAAAYPIFEMIQRDTMSKVSTENGQKLSQLEDSFRENFSSCRRSGSGKSTVISLIERFYEPLSGQILLDRNNIRELDLTWLRQQIGLVNQEPALFATIIRENILYGKDDATLEEINQAVRLSDAHSFINNLPDGLDTQVGERGIQLSGGQKQRIAISRAIIKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVIVAHRLSTIRNADMIAVTVGGKKVVEIGNHEELISNPNNVYASLVQIQETAFSQGHVSCNIPLALYLCLYDYFDCNIRRLGESSSRSTSFRGSFRSDKESTSRAFGDGAENVGSSRHVSARRQYSMIGPDWLYGVFGTLAYYMDWDTTRHEVKKVAFVFCGAAVLTITAHAIEHLSFGIMGERLTLQVREKMFSAILKSEIGWFDDTNNTSSMLSSLLETDATFLRTVVVDRSMILLQNVGLVVASFIIAFMLNWRITLVVLATYPLIISGHISKVSSCSIFQHYQTSTSVCVLTTWVPTFQKLFMQGFGGNLSKAYLKANMLAGEAVSNIRTVAAFCAEQKILDLYANELVEPSKRSFNRGQIAGVFYGISEFFIFSSYGLASYESVLMGNELSSFKSIMKSFMVLIVTALAMGETLALAPGLLKGNQMVASIFEVMDRKTVILGDVGEELKTVEGTIGLKRIQFSYLSRPDVVIFNDFNLTVPAGKNIALVGHSGCGKSSVISLILRFYDPTSGKVMVDGKDIKKLNLKSLRKHIGLVQQEPALFATSIYENILYGKEGASEAEVIEAAKLANTHSFISALPEGYSTKVDEATSALDLESERVVQQALDKLMQNRTTVIVAHRLSTIRNADQIAVLEDGKIIERGTHSREHRWSILQISQPSTITAAACTIT 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0972 987 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 113 359 IPR003439 GO:0005524
Ssu5g0972 987 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 361 IPR027417 -
Ssu5g0972 987 ProSitePatterns ABC transporters family signature. 261 275 IPR017871 GO:0005524
Ssu5g0972 987 Gene3D ABC transporter type 1, transmembrane domain 13 138 IPR036640 GO:0005524|GO:0016021
Ssu5g0972 987 Gene3D ABC transporter type 1, transmembrane domain 611 761 IPR036640 GO:0005524|GO:0016021
Ssu5g0972 987 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 766 963 IPR027417 -
Ssu5g0972 987 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 13 588 IPR039421 -
Ssu5g0972 987 Gene3D ABC transporter type 1, transmembrane domain 376 597 IPR036640 GO:0005524|GO:0016021
Ssu5g0972 987 Gene3D - 159 374 IPR027417 -
Ssu5g0972 987 MobiDBLite consensus disorder prediction 397 425 - -
Ssu5g0972 987 SMART AAA_5 158 342 IPR003593 -
Ssu5g0972 987 SMART AAA_5 799 955 IPR003593 -
Ssu5g0972 987 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 904 964 IPR039421 -
Ssu5g0972 987 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 615 904 IPR039421 -
Ssu5g0972 987 Pfam ABC transporter 158 289 IPR003439 GO:0005524
Ssu5g0972 987 SUPERFAMILY ABC transporter transmembrane region 604 753 IPR036640 GO:0005524|GO:0016021
Ssu5g0972 987 Pfam ABC transporter transmembrane region 15 98 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu5g0972 987 Pfam ABC transporter transmembrane region 457 724 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu5g0972 987 CDD ABC_6TM_Pgp_ABCB1_D2_like 437 757 - -
Ssu5g0972 987 Pfam ABC transporter 791 926 IPR003439 GO:0005524
Ssu5g0972 987 Gene3D - 762 904 IPR027417 -
Ssu5g0972 987 Gene3D - 905 964 IPR027417 -
Ssu5g0972 987 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 772 978 IPR003439 GO:0005524
Ssu5g0972 987 SUPERFAMILY ABC transporter transmembrane region 15 127 IPR036640 GO:0005524|GO:0016021
Ssu5g0972 987 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 13 588 - -
Ssu5g0972 987 SUPERFAMILY ABC transporter transmembrane region 459 582 IPR036640 GO:0005524|GO:0016021
Ssu5g0972 987 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 438 739 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu5g0972 987 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 17 114 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu5g0972 987 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 615 904 - -
Ssu5g0972 987 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 904 964 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0972 Ssu-Chr5 30157357 30173280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0972 13 963 Calmodulin-binding Proteins AT2G36910 44.624 0.0 805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0972 K05658 - gmx:100809752 1471.45