Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0969 ATGGATTACGCTCGAGACGGAAACGTGGTGCAAATAATCACTGGCGGCGGTGGCGGAGACAGCTGGTCCAGCGACCAGGCCGATTGGGCGACGGAGGACGAGTACCGGTTCtggaacaacaacaacaacaacaacgggGATGCGGAAACGACGCCGTCGAACTCGAATTACGAGGCACGGTCGCGGTCGGGGAGCGAGCCGCCGAGCAAGAAGTCGCGGAATTCGCAGGAGGGGAGCTCGAGCCGGTCGAAGGCGATCGggaagatgttcttcaagacGAAGCTGTGCTGCAAGTTCAGGGCGGGGACGTGCCCTTACATCACCAACTGCAATTTCGCCCACAGCATCGAAGAGCTGCGCCGCCCACCGCCGAATTGGCAGGAGATCGTGGCGGCGCACGAGGAGGAGAAGGCAGTGATGACAGAGCCAAGGGAGGAGTTTCAGATTCCAACGGTAGGGTCTTCCACCTTTGCTGGGGATATGATGCAGAGGTCCTATAAGGGAAGGCATTGTAAGAAGTTTTACACCGAGGAAGGGTGCCCCTATGGGGATAGTTGCACCTTTCTTCATGATGAGCAATCGAAGAATCGCGAGAGTGTTGCTATAAGTTTAGGTCCTGGGGGTTATGCTGGTGGTGGCGGCAGCggtagcagtggtggtggtgctaCTGCTGCTGGGAATGGGCCTAATTCGAAGCCCTCTAATTGGAAAACCAGGATTTGCAATAAGTGGGAGCTGACAGGGTATTGCCCCTTTGGCAACAAATGCCATTTTGCTCATGGTGCCACAGAGTTGCACAGATATGGAGGCGGGCTTATGGAGGGAGAAAATAGAGATGCTGCTTCTGCGGTTGCAACTGACACAAATAAGGGGGTACCTTCAAAAGCTTCTGCTGATAATGTGGTTGCAGCAGTTACCCCTATTGCTCATTCTGATGTGTATCATATTGGAGTCCCTTCACAAAGGCCTTCCATTGTGATTCAGAGGCCAGGACAGAGAGCTCATCACAAATGGAAAGGTCCAGATAAAATCAGTAGGATATATGGTGATTGGATTGATGACATCGAATAG 1071 0.5005 MDYARDGNVVQIITGGGGGDSWSSDQADWATEDEYRFWNNNNNNNGDAETTPSNSNYEARSRSGSEPPSKKSRNSQEGSSSRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEEKAVMTEPREEFQIPTVGSSTFAGDMMQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYAGGGGSGSSGGGATAAGNGPNSKPSNWKTRICNKWELTGYCPFGNKCHFAHGATELHRYGGGLMEGENRDAASAVATDTNKGVPSKASADNVVAAVTPIAHSDVYHIGVPSQRPSIVIQRPGQRAHHKWKGPDKISRIYGDWIDDIE 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0969 356 Gene3D - 229 267 - -
Ssu5g0969 356 Gene3D - 85 121 - -
Ssu5g0969 356 Pfam CCCH-type zinc finger 169 191 IPR041367 -
Ssu5g0969 356 ProSiteProfiles Zinc finger C3H1-type profile. 235 263 IPR000571 GO:0046872
Ssu5g0969 356 Gene3D - 158 205 - -
Ssu5g0969 356 SUPERFAMILY CCCH zinc finger 88 121 IPR036855 GO:0046872
Ssu5g0969 356 MobiDBLite consensus disorder prediction 35 83 - -
Ssu5g0969 356 ProSiteProfiles Zinc finger C3H1-type profile. 165 193 IPR000571 GO:0046872
Ssu5g0969 356 SUPERFAMILY CCCH zinc finger 233 266 IPR036855 GO:0046872
Ssu5g0969 356 MobiDBLite consensus disorder prediction 1 83 - -
Ssu5g0969 356 MobiDBLite consensus disorder prediction 212 236 - -
Ssu5g0969 356 ProSiteProfiles Zinc finger C3H1-type profile. 90 117 IPR000571 GO:0046872
Ssu5g0969 356 PANTHER CCCH ZINC FINGER/TIS11-RELATED 20 353 IPR045877 GO:0003729
Ssu5g0969 356 MobiDBLite consensus disorder prediction 220 236 - -
Ssu5g0969 356 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 20 353 - -
Ssu5g0969 356 SUPERFAMILY CCCH zinc finger 164 193 IPR036855 GO:0046872
Ssu5g0969 356 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 91 115 IPR000571 GO:0046872
Ssu5g0969 356 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 236 261 IPR000571 GO:0046872
Ssu5g0969 356 SMART c3hfinal6 165 192 IPR000571 GO:0046872
Ssu5g0969 356 SMART c3hfinal6 90 116 IPR000571 GO:0046872
Ssu5g0969 356 SMART c3hfinal6 235 262 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0969 Ssu-Chr5 29739469 29742079 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0969 237 265 C3H Transcription Factor Family AT1G68200 62.069 3.80e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu5g0969 zf-CCCH 1.1e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0969 - - gmx:100788208 606.675