Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0968 ATGGGCCTTTCAACGCACCGCCTCGGGTTCCCTCATTCGTCTCACACCAAACAGGTCCCCCCAAGGGGCCTCGACCCTTCTCTGCTTCAAGTGTTCCCCACCTTCCTCTACTCCTCCGTGAAGGACCTCCGCAAGGAGAAGTACAGCCTCGAATGCGCCATCTGTTTGTTGGAGTTCGAGGAGGATAACATGCTTCGCCTCTTGACCCTCTGCTGCCACGTCTTCCACCAGGATTGCATCGACCTCTGGCTCCGTTCGCACAAGACCTGCCCTGTTTGTCGACGAGACCTCGATTCGCCCACCGAGGAAACGCAGAAATGTGGCGACGTTATGGGAGAAGAGGGCGTAGGCGTGGGCATGGTGTCATCGACGAGTGGTGAGATACGGATTGATGTAAGAGAAGTGGAAGAAGGTGGTGCGCGCGATGGAAATCAAAGGCAAGAACGTGAAGGAACTGATGGTGAGCATGATCATGCAGTGATTCATCAACAGGTGGAACAAACGTTTGTGAGGTCACACTCAACAGGGCACTCGATAGTTTTGATTAGAGGTGAGGGAGATGAGGGGAAGGACGATGATAAGTATACGTTGCGATTGCCGGAGCATGTTTTGAGAGTGAGGCAAAATAAGCATAATTGTACGAGGAGCTGTGCGAGTTACAGGGACATGACGAGGCTTGTTGCTGCTGCACCTTGTAGTAATTGTGGCTTTATTCAACCCTTGTCAGCGGGCTGCTCCTTCCCTGGCCATACTCAAAAATCTTGA 765 0.5255 MGLSTHRLGFPHSSHTKQVPPRGLDPSLLQVFPTFLYSSVKDLRKEKYSLECAICLLEFEEDNMLRLLTLCCHVFHQDCIDLWLRSHKTCPVCRRDLDSPTEETQKCGDVMGEEGVGVGMVSSTSGEIRIDVREVEEGGARDGNQRQEREGTDGEHDHAVIHQQVEQTFVRSHSTGHSIVLIRGEGDEGKDDDKYTLRLPEHVLRVRQNKHNCTRSCASYRDMTRLVAAAPCSNCGFIQPLSAGCSFPGHTQKS 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0968 254 Pfam Ring finger domain 51 94 IPR001841 -
Ssu5g0968 254 PANTHER RING FINGER DOMAIN-CONTAINING 16 225 - -
Ssu5g0968 254 PANTHER RING-H2 FINGER PROTEIN ATL29 16 225 - -
Ssu5g0968 254 SUPERFAMILY RING/U-box 46 101 - -
Ssu5g0968 254 MobiDBLite consensus disorder prediction 133 155 - -
Ssu5g0968 254 MobiDBLite consensus disorder prediction 1 22 - -
Ssu5g0968 254 CDD RING-H2_EL5_like 51 94 - -
Ssu5g0968 254 ProSiteProfiles Zinc finger RING-type profile. 52 94 IPR001841 -
Ssu5g0968 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 100 IPR013083 -
Ssu5g0968 254 SMART ring_2 52 93 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0968 Ssu-Chr5 29602279 29603043 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0968 17 205 Rapid Response to Elicitors AT2G35000 38.947 9.56e-36 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0968 - - gmx:100815505 327.405