Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0966 ATGGCTTTGGAAACTCTTTCATCCAATGAGTTTTCCAACTTCATTATCTATGACACTATCTCTGCAACCCCATTTAGCAGCCATGACCCTTCGGAGGCTAGTTTCTTGGAAAGTTTAGTGAACTATCAGGAGCATGACCCTGCATTTGGTAACTGCGCAATGAGGATCAGAAAGCACCAAGCCAGCGAGCCAGAAACCATTGGAAGGAGGCAGAATGTGGTAGGGGTGCAAGGTaggaagaagaggagaaggaaGCCAAGGATTTGCAAAAACAAGGAAGAGGCTGAGACACAAAGAATCACCCACATTACAGTGGAAAGAAACCGCCGGAAGCAGATGAATGAGCATCTTGCTGTCCTTCGTTCACTCATGCCTGAGTCCTACGTCCAAAGGGGTGACCAAGCCTCTATAGTGGGAGGTGCCATAGAGTTTGTGAAGGAGCTGGAGCACTTCTTGCAATCACTTGAAGCTAGAAAGCTGCAACTTATACAGCAAGAAGTGGCACCAACCAATGAACATACGGCCAATTCCAAACTCAAGCAACCCCCttttgcacaattttttttgtatcctCAGTACACATGGTCCCAGACTCTTAACAAATACACATCCAAGACCAAGGCTACCATAGCTGATATCGAGGTCACTTTAATCGAGACCCATGCAAATCTTCGaattctcacaaggagaagccCTGGGCAGCTAACAAAGTTGATTGCTGGTTTTCAAACGCTCTACCTCACCGTCCTACATCTTAATGTCACCACCATAGACCCTTTGGTATTCTATTCCATCAGTGTTAAGgTTGAAGAAGGATTCCAACTTGGTTCAGTAGATGGTATTGTAACGGCAGttcattatttgtttgaaagaaTTGAAGAAGAAACTTCCCTTTGCTGTTGA 903 0.4153 MALETLSSNEFSNFIIYDTISATPFSSHDPSEASFLESLVNYQEHDPAFGNCAMRIRKHQASEPETIGRRQNVVGVQGRKKRRRKPRICKNKEEAETQRITHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHFLQSLEARKLQLIQQEVAPTNEHTANSKLKQPPFAQFFLYPQYTWSQTLNKYTSKTKATIADIEVTLIETHANLRILTRRSPGQLTKLIAGFQTLYLTVLHLNVTTIDPLVFYSISVKVEEGFQLGSVDGIVTAVHYLFERIEEETSLCC 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0966 300 CDD bHLH_AtFAMA_like 100 159 - -
Ssu5g0966 300 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 97 148 IPR011598 GO:0046983
Ssu5g0966 300 PANTHER TRANSCRIPTION FACTOR BHLH71 1 299 - -
Ssu5g0966 300 Pfam Helix-loop-helix DNA-binding domain 98 149 IPR011598 GO:0046983
Ssu5g0966 300 SMART finulus 103 154 IPR011598 GO:0046983
Ssu5g0966 300 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 96 168 IPR036638 GO:0046983
Ssu5g0966 300 Coils Coil 145 165 - -
Ssu5g0966 300 Gene3D - 94 170 IPR036638 GO:0046983
Ssu5g0966 300 PANTHER MAX DIMERIZATION, MAD 1 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0966 Ssu-Chr5 29558283 29559844 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0966 89 269 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 56.593 1.47e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu5g0966 HLH 5.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0966 - - pvu:PHAVU_003G284500g 498.819