Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0965 ATGGCTGTTGGGAACCCAAGAACTTGGATTCCATATATGAACAGCAAAGACTGTTCTCAAGGATTTTGTAGCTTGTACTGTCCACAGTGGTGTTACATAGTGTATCCTCCTCCTCCACCCTTTGAATACCCTGATGATGATTCAAGCCCAAATTTCTCCCCTCTTCTCATTGCAATCATTGGGATCTTAGCCACTGCTTTTCTTGTGGTGAGTTACTACACTCTAATATCCAAGTACTGTGGCCCCGGAGAGTCTGCACGCAGAGACCCAAATGATGAGTTGCAAGACAGTCACAATCACAATCACGAACCATGGCATGCTTCAACCACAGGCCTGGACGAGGCTCTAATCAAATCCATTGCAGTTTTCAAGTACAAGAAGGGAGATGGTGGTTCTGTTGGGGTCACGGATTGTTCAGTTTGTCTCGGTGAGTTTCAAGATGATGAAAGTGTTCGACTCTTGCCAAAATGCAGCCACGTTTTTCATCTTCCTTGCATTGACACGTGGCTCAAGTCTCACTCTAGCTGCCCCTTGTGCCGTGCTAGCATATTCACTGTCAATGCTCCGGCACTTCAGGTTCCTACCCCCGAGGTAGAGGTCCCTTTAAGGAATGAAACTTCTTCTGAAAATGAAACTGTTGGAAGTGGCAATGAGtttggggtggtggtggtggaagaAGAAAGCATACATCATGCTAGAGCTTATCCAAAGCCCACATTGCGTGCTTTTAGTGATTTAAGTAGTTTGCAGGTCAGGCACAGAGTGATTGAGATTAGAGATGAAGTGTGTGAATCCATTCGGTCAGTGTCTATGGAGCATTTGTTTCAAAGTGGTCTCTCTGTTGCTGATGTGTTGCAAATGAATGAAGAGGAATATTCTCAAGTAGAAGGGTGCTCTACTGAAGCTAGTCCTTCGACGAGATCACGCGGAGATAGTAGCAAGTCCAGCTACAAAACAAGGGTGTTGCATTGTGTGTTGAGCCCAATTGCGATGAAGAGATCGTTTTCCAGTGGAATATTCTCGGTTAGCAAAAGTGGCAGAGGAAGGCACGGAACTATACCCATCTGA 1068 0.4448 MAVGNPRTWIPYMNSKDCSQGFCSLYCPQWCYIVYPPPPPFEYPDDDSSPNFSPLLIAIIGILATAFLVVSYYTLISKYCGPGESARRDPNDELQDSHNHNHEPWHASTTGLDEALIKSIAVFKYKKGDGGSVGVTDCSVCLGEFQDDESVRLLPKCSHVFHLPCIDTWLKSHSSCPLCRASIFTVNAPALQVPTPEVEVPLRNETSSENETVGSGNEFGVVVVEEESIHHARAYPKPTLRAFSDLSSLQVRHRVIEIRDEVCESIRSVSMEHLFQSGLSVADVLQMNEEEYSQVEGCSTEASPSTRSRGDSSKSSYKTRVLHCVLSPIAMKRSFSSGIFSVSKSGRGRHGTIPI 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0965 355 SUPERFAMILY RING/U-box 137 186 - -
Ssu5g0965 355 MobiDBLite consensus disorder prediction 294 314 - -
Ssu5g0965 355 MobiDBLite consensus disorder prediction 87 107 - -
Ssu5g0965 355 CDD mRING-H2-C3H2C2D_ZSWM2 138 180 - -
Ssu5g0965 355 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Ssu5g0965 355 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 346 IPR044675 -
Ssu5g0965 355 MobiDBLite consensus disorder prediction 87 103 - -
Ssu5g0965 355 Pfam Ring finger domain 137 180 IPR001841 -
Ssu5g0965 355 SMART ring_2 138 179 IPR001841 -
Ssu5g0965 355 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 3 346 - -
Ssu5g0965 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 185 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0965 Ssu-Chr5 29386874 29387941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0965 5 355 C3H Transcription Factor Family AT5G17600 41.425 9.62e-66 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0965 - - vun:114176645 538.495