LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu5g0963	ATGCGCTACTTCTTTGTGAAGAGCTTGGTATTGCCAAAACCAACTGGTTTTCCAACAGGTGAACTTTCAATTGATCAGGCTCTAAAACGAGCTCAAGGGCTCAAGCCTCCTATTGATGGACCTGCAAGAGAGCTATATGCTCAGAGATGTCATTGGATTACTCCCACAGAAGGAAGAATTAAGGCAAATTTTGATGCAACAATCAAGAATGGTATAGGTACTGGTTTTGGAGCAGTGTACAGGTACTATTCAAGGTTTCCTTTGGCAACAACAACTCTGTTTATGAAGTGTGAATATGGACCTAGGGAAGTAGGAGCTTTGGCTTTTAGGTGGTGCATAGATGTTTGGTTTGGTCGTGCGAGACGACTTTGTTGTGCGGATAAGAACGACCTCTCCCCTCTCTCATACTTTCTATCTCTAGGAAACATCATCTACCGCCTCCAAGTCCTACAAGAACCCATTCCCTCCCACACCGCCCCAGCTCTTCCAAAACCAAAATCTCACTCTCTCCTCTCAAAACACACATAcctcttccttttttctcttctcttcttcctccaaAACAACATACTCACCCCCACTTCCTCACATTCACCAcaacacacacaacacaacCTGTCTCCAATCACTGCCTTCAAGCTGGCGTTCGAAAACCAAGACACCACTGTCCGAGAAATCAAGCCCAAGAACCGGAGAATCATGGGTGCTGGAGGCCCTGATGATGAGGACAACAGATGGCCACCGTGGTTGAAGCCTCTGCTCAAAGAGAGCTTCTTTGTTCAATGCAACGTGCACGCTGATTCACACAAGAGCGAGTGCAATATGTACTGTTTAGATTGTATGAACGGTGCGCTCTGCTCTCTCTGCCTCGCTTACCACAAAGATCACCGTGCTATTCAGATAAGGAGGTCCTCATACCATGATGTGATTAGGGTCAATGAGATTCAGAAGGTGTTGGACATCACAGGGGTCCAAACCTACATTATCAACAGCGCAAGGGTTGTTTTCTTGAATGAGAGGCCTCAGCCAAGGCCTGGAAAAGGTGTCACCAACACTTGTGAAGTCTGCGAGCGTAGCCTTCTTGATTCCTACCGATTCTGTTCTCTTGGTTGCAAGATTGTTGGGACTTCAAGGAACTTcctgaagaagaaaaagtccGCGGGAATGGCGTCAGACTCAGAGGATTCATACAGCAGCAACAGCAGCCACGGGAAGAAGAACAGCAACAAGGTGCAGAGCTTCACACCGACCACACCGCCACCAACTTCGGTTAATTACAAAACGGCCAAGAGAAGAAAGGGAATACCACACCGTGCCCCAATGGGAGGACTAGTCATAGAATTCTAG	1347	0.4484	MRYFFVKSLVLPKPTGFPTGELSIDQALKRAQGLKPPIDGPARELYAQRCHWITPTEGRIKANFDATIKNGIGTGFGAVYRYYSRFPLATTTLFMKCEYGPREVGALAFRWCIDVWFGRARRLCCADKNDLSPLSYFLSLGNIIYRLQVLQEPIPSHTAPALPKPKSHSLLSKHTYLFLFSLLFFLQNNILTPTSSHSPQHTQHNLSPITAFKLAFENQDTTVREIKPKNRRIMGAGGPDDEDNRWPPWLKPLLKESFFVQCNVHADSHKSECNMYCLDCMNGALCSLCLAYHKDHRAIQIRRSSYHDVIRVNEIQKVLDITGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCERSLLDSYRFCSLGCKIVGTSRNFLKKKKSAGMASDSEDSYSSNSSHGKKNSNKVQSFTPTTPPPTSVNYKTAKRRKGIPHRAPMGGLVIEF	448

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu5g0963	448	MobiDBLite	consensus disorder prediction	391	425	-	-
	Ssu5g0963	448	Pfam	PLATZ transcription factor	302	373	IPR006734	-
	Ssu5g0963	448	PANTHER	PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN	221	443	-	-
	Ssu5g0963	448	PANTHER	PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN	221	443	-	-
	Ssu5g0963	448	MobiDBLite	consensus disorder prediction	390	442	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu5g0963	Ssu-Chr5	28780726	28785668	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	PLATZ	Ssu5g0963		PLATZ	2e-29	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu5g0963	-		-	vra:106774881	472.626