Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0962 ATGGCGTCCGAAGGCTTCACCGACAAGAACACTGTGTTCAGGAAACTCAAGGCGAAGTCTGAAAATAAGatGTGTTTCGATTGCAATGCGAAGAACCCTACCTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGATTGCTCTGCCGTTCATCGCAGTCTCGGCGTGCACATCAGCTTCGTGAGGTCTACAAATTTGGACTCATGGAGTCCTGAGCAACTAAAAATGATGAGCTTTGGAGGAAACAATCGTGCACAGGTTTTCTTTAAGCAACATGGTTGGACTGATGGTGGTAAAATAGAGGCTAAATATACATCCAGAGCTGCAGACTTGTATAGGCAAATTCTTTCAAAGGAAGTAGCTAAAAGTATGGCTGAGGATGGAGGCTTGCCTTCATCACCTGTTGCTTCTCAGTCTGCCCAGGGGATTAATGGGCTTGCTGAAGTCAGGACCAATGAAGTGCCAAAAGAAAACACTCTGGAGAAGCCAGAAAAGCCTGAAAGCACTTCTTCACCTAGAGCTTCACATACAGTAATTTCAAGTACTGTCAAGAAACCTATTGGTGCTAAAAAAGCTGGGAAGAGTGGGGGGCTTGGTGCTCGTAAACTCGTTAAAAAGCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCACCAGCTCCAGTTTCATCCTCAACAAACAATATGCCTGCTGGGCCATCTCGGTTTGAGTATGTAGAAAATGTCCAATCATCTGAGTTGAACACTGGAGGTTCACATGTGATTAGTCATGTGTCTCCACCAAAGTCATCAAGCTTCTTTGCAGACTTTGGAATGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAAATTCAGGAATCTGATGAAGCAAGAAGGAAGTTTTCAAATGCTAAATCTATTTCTTCATCCCAATTTTTCGGAGATCAGAACAAAGCTGCAGATGTGGATTCTCAAGTTACTTTGTCTAAGTTTTCGGGCTCAACTGCCATCTCCAGTGCTGATCTTTTTGGTGACTCAAGAGACAACTCCATTGATCTTGCTGCTAGTGACCTCCTCAATCGATTATCTTTCCAGGCACAACAGGATCTCTCTTCCCTTAAGAACATTGCAGGGGAGACTGGCAAGAAGCTCAGCTCATTGGCCTCCACATTGATGACAGATCTTCAGGACCGAATCCTCTAA 1203 0.453 MASEGFTDKNTVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLKMMSFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQILSKEVAKSMAEDGGLPSSPVASQSAQGINGLAEVRTNEVPKENTLEKPEKPESTSSPRASHTVISSTVKKPIGAKKAGKSGGLGARKLVKKPSESLYEQKPEEPPAPVSSSTNNMPAGPSRFEYVENVQSSELNTGGSHVISHVSPPKSSSFFADFGMDGGFPKKSGPSSSKVQIQESDEARRKFSNAKSISSSQFFGDQNKAADVDSQVTLSKFSGSTAISSADLFGDSRDNSIDLAASDLLNRLSFQAQQDLSSLKNIAGETGKKLSSLASTLMTDLQDRIL 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0962 400 MobiDBLite consensus disorder prediction 147 236 - -
Ssu5g0962 400 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD9-RELATED 1 400 - -
Ssu5g0962 400 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Ssu5g0962 400 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Ssu5g0962 400 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Ssu5g0962 400 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 1 400 - -
Ssu5g0962 400 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Ssu5g0962 400 SUPERFAMILY ArfGap/RecO-like zinc finger 11 125 IPR037278 -
Ssu5g0962 400 Gene3D Arf GTPase activating protein 2 135 IPR038508 -
Ssu5g0962 400 MobiDBLite consensus disorder prediction 221 236 - -
Ssu5g0962 400 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Ssu5g0962 400 CDD ArfGap_ArfGap2_3_like 8 123 - -
Ssu5g0962 400 Pfam Putative GTPase activating protein for Arf 11 100 IPR001164 GO:0005096
Ssu5g0962 400 MobiDBLite consensus disorder prediction 279 300 - -
Ssu5g0962 400 MobiDBLite consensus disorder prediction 155 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0962 Ssu-Chr5 28573753 28582113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0962 13 91 C2H2 Transcription Factor Family AT4G21160 46.250 1.13e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0962 K12493 K11855 gmx:100785169 726.857