Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0961 ATGGCTTCTTTTGCCTTTGTTCTTAGTGATTTGAGGATCCTCCTGAAGATGCTTTTGTTTCAGTTTGTTGCCATGCTTTCTTTAACCAATGCATCTGTGAACGTCGTACTGGTGATGACAATCAGAGATATAGTCAGCATCAAATTAGGAGACATCATCCCAGCTGATGCTCGTCTCTTTGACGAAGATCCCCTCAAGATCGATCAGTCTGCACTCACTGGTGAGTCCTTGCCTGTTTCTAAGAACCATGGTGATGAAGTCTTCTCTGGCTCCAAAGTGAAGCAAGGTGGGATTGAGGCTGTTGTAATCTACTGGGCTGCACACCTTTATATCAGAACTCAGTTTCCAAAAGGTTTGATTATGGGAGCAGCAGTATCAACTATATACTGCAATCTGAGGTTTAGACACCCAAAACTATTATAG 423 0.4279 MASFAFVLSDLRILLKMLLFQFVAMLSLTNASVNVVLVMTIRDIVSIKLGDIIPADARLFDEDPLKIDQSALTGESLPVSKNHGDEVFSGSKVKQGGIEAVVIYWAAHLYIRTQFPKGLIMGAAVSTIYCNLRFRHPKLL 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0961 140 Gene3D - 43 105 - -
Ssu5g0961 140 Pfam E1-E2 ATPase 41 107 - -
Ssu5g0961 140 PANTHER PLASMA MEMBRANE ATPASE 38 110 - -
Ssu5g0961 140 SUPERFAMILY Calcium ATPase, transduction domain A 42 108 IPR008250 -
Ssu5g0961 140 PANTHER CALCIUM-TRANSPORTING ATPASE 38 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0961 Ssu-Chr5 28473212 28474499 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0961 43 110 Primary Pumps ATPases AT2G07560 72.059 2.88e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0961 K01535 - gmx:100818997 107.457