Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0956 ATGCATATGGCATTGACTAGGAAGGAACATAGCCACAAATATAGAGACAAAGATCGATCACTGTGTGGTCCAAAAATGTACGAAGAAAGTGGTTGCTTTGATCCCAATGCAATGATGGCACAGGGAACAGGAGCAGGAGAAGACTGCTTCGCCCAAATGGTTCCTGATTCAGAGGCAGCACTTGAGGCAGTCATGACTGCCACTGCCACACACACCCAGAACACTTTTGCGGTGGAAAACTTACCTTACTCATATTCCAGCGGAGAAGATGCTGCAAATGAAACTGCTACTTCTTTTACCCTCACAAATAGAGTTGCAGCCGCTGCCACTGCACTGGAGATCATTGCACATCCCCAACAAAATGCATACAATCATATCAACAACTTGCACACCCAGTTTGCGGAAGTGGTGAACCATGGTTCAAGTCAGGAGCTTTATTCCTTTCCCCACTCCACCACACTTGAGAGGGGTCACCGTCACCAGAATCAGCAATTTCCTTATCCCACACCAACACCAGATCTCCTTAACCTCCTCCACTTGCCAACAACCCCAGCTGGGAACTCCTTTGAAAACCCAACCAATCTTCCAAAACCCTCTGGCCCTATGGGAACAGCAGATAGCACAAACGTCTCCTCTGTTTCCTATGACCCTTTCTTGCATCCGAACCTGCAAGCACCTCCCCAGGCTGCACTCAGAGAGTTGCTTCCACACATGCCAAATGATTTTGCCTTTGGCAGTGGGGATGACATAGAAGGCAGTGGAGTTGCATATCAAGATTATGGAAATGGAGTGACGGAGTTCACTGAAGACGTGAGTTATGTAGGGAAAAAGAGAGGGGGCAAAAGGACCAAGCAGTTTACCAGTACCACTGAGAGACAAAGGAGAGTGGATTTGAGCAGTAAATTTGATGCTTTGAAACAACTCATCCCAAACCCCTCCAAGAGTGATAGAGCATCCGTGGTGGGAGATGCTATTGAGTATATTAGAGAGCTTCTAAGGGCAGTGAACGAACTAAAATTATTGGCGGAGAAGAAAAGGCACGAGAAAGAAAGGGTGATGATGAGGCACAAAGTTGAAACTGAAGGTGACTCCAAGGTGGAAGCAATTGGCGACCCAGATGATCGTTCCTACATTGAAAGCTTAAGAAGTTCATGGATACAAAGGAAGTCCAAAGACACCGAGGTTGATGTGCGCATTGTTGACAACGAGGTAATAATTAAGCTTGTTCAAAGGAAGAAGATCGATTGCTTGGTGCATGTCTCACTGGCTCTGGATGAACTTAACCTGGATCTCCAACATGTTGCTGGTGGGCACATTGGTGATTTCTGCAGCTATCTGTTCAATACCAAGATATGTGAAGGTTCCTCAGTTTATGCAAGTGCCATAGCCAACAAGCTCATTGAGGTCATGGACTCAAGTTTGGCAGCAGCGGGACTCACTTAA 1443 0.465 MHMALTRKEHSHKYRDKDRSLCGPKMYEESGCFDPNAMMAQGTGAGEDCFAQMVPDSEAALEAVMTATATHTQNTFAVENLPYSYSSGEDAANETATSFTLTNRVAAAATALEIIAHPQQNAYNHINNLHTQFAEVVNHGSSQELYSFPHSTTLERGHRHQNQQFPYPTPTPDLLNLLHLPTTPAGNSFENPTNLPKPSGPMGTADSTNVSSVSYDPFLHPNLQAPPQAALRELLPHMPNDFAFGSGDDIEGSGVAYQDYGNGVTEFTEDVSYVGKKRGGKRTKQFTSTTERQRRVDLSSKFDALKQLIPNPSKSDRASVVGDAIEYIRELLRAVNELKLLAEKKRHEKERVMMRHKVETEGDSKVEAIGDPDDRSYIESLRSSWIQRKSKDTEVDVRIVDNEVIIKLVQRKKIDCLVHVSLALDELNLDLQHVAGGHIGDFCSYLFNTKICEGSSVYASAIANKLIEVMDSSLAAAGLT 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0956 480 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 281 354 IPR036638 GO:0046983
Ssu5g0956 480 Pfam Helix-loop-helix DNA-binding domain 289 331 IPR011598 GO:0046983
Ssu5g0956 480 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 282 331 IPR011598 GO:0046983
Ssu5g0956 480 MobiDBLite consensus disorder prediction 1 20 - -
Ssu5g0956 480 PANTHER TRANSCRIPTION FACTOR BHLH91 26 476 IPR045895 GO:0006355|GO:0048658
Ssu5g0956 480 SMART finulus 288 337 IPR011598 GO:0046983
Ssu5g0956 480 Coils Coil 328 348 - -
Ssu5g0956 480 Gene3D - 275 350 IPR036638 GO:0046983
Ssu5g0956 480 PANTHER TRANSCRIPTION FACTOR BHLH91 26 476 - -
Ssu5g0956 480 MobiDBLite consensus disorder prediction 185 205 - -
Ssu5g0956 480 CDD bHLH_AtMYC1_like 287 351 IPR045896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0956 Ssu-Chr5 28037888 28040159 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0956 26 477 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 37.067 1.01e-74 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu5g0956 HLH 2.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0956 - - vra:106767981 598.971