Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0954 ATGTCAGCACCATCAccgtcaccatcaccatcaccggCGTCATTTGCCACCATGCCACCACCACAAGTCTCTTCCCCTGCACCTGACAGTTCAACTTCACCATCCCAGTCTCTATCTCCGGCTACTCCTTCGCTGGCACCACTGCCTCTGGCATCaccttcaccaccaccaccactgccactgcAAACGCCGGCATCAATTTCTCCTCCAGCAGCCCTGCCACCTCCTCAGAGTTCTTCTCCTTCTCCAGCATCTACTACACCTACAAGTACTAGTGCACCTCCTCCTCCTACTAGGATAAGTCCTTTTGATTCTCATTCTCCTCCATCACAAACTTTTGGATTGACTCCACCACCTGCATCAGCACAAAATTCTGGCCCTGGAAACAGTAGTGGCACTGGTGCAGTGGCAGTTGGTGTAGTGACGGGAATTCTACTGCTTGGCTTCATTGGCATTGCTATCTGGTGCCTGACGAGGCAAAAGGAAAGGGTTTCTAAGAGTGGTGGTTATGACTTGCCATCCGCTCTTGGCTCGTCCCctgaatcagATTTGTCCTTTATTAAGATTCGTTCTTCGGCTCCTCTTACACAAAGAGCTTCCGGTGGTAATACACCATCAGGACTAGGCAACTCAAGGTCATTGTTTGCATATGAGGAGCTAATCAAGGCCACAAACAATTTTTCAACTCAAAATCTTTTGGGAGAGGGTGGATTTGGTTGTGTGTATAAAGGATCACTTCCAGATGGGAGAGAGGTAGCAGTTAAGCAACTGAAAATTGAAGGAGGTCAGGGTGAGAGAGAATTCAAAGCTGAAGTGGAAATTATTAGCCGTATACATCACCGTCATTTGGTTTCCTTAGTGGGATACTGCATTTCAGATAACAGAAGACTGCTTGTCTATGACTATGTCCCCAACAATACCCTGTATTTTCATCTTCATGGGGAAGGTAGGCCACTGCTGGACTGGGCAAACCGTGTTAAAATTGCGGCTGGAGCAGCTAGAGGAATAGCTTATCTCCATGAAGACTGCAATCCTCGGATTATTCACAGGGATATCAAGTCAGCAAACATTCTTTTAGACTACAACTTTGAAGCTCGAGTCTCAGATTTTGGGCTGGCCAAATTAGCTGTTGATGCAAATACGCATGTAACCACACGTGTCATGGGAACTTTTGGATGTGTTGCGCCTGAATATGTATCAAGTGGTAAATTGACTGAGAAGTCAGATGTATACTCTTTTGGAGTCATGCTTTTGGAGCTCATTACTGGAAGGAAGCCAGTAGATGTATCTCAACCAGTTGGAGAAGAGAGTCTAGTTGAATGGGCTCGACCTTTGCTAAATGATGCGCTTGATAGTGAGGAATTTGAGAGTTTGATAGATCCAAAGCTAGGAAAGAACTATGTTGAAAGTGAAATGTTTTGCATGATTGAAGTTGCTGCTGCTTGCGTGCGATATTCATCTGCCAAAAGACCTCGCATGGGACAGGTCGTTAGAGCTTTTGATAGTTTAGCTACTTGTGATATTTCAAATGGAATGAGAGTTGGGGACTCTGCGCAGCAATCAGCAGAAATAAGATTATTTCGTAGGATGGCATTTGGATTTGGTAGTCAAGATTATAACGTAGACTTTTTAAGCCACACAGATTAG 1647 0.4323 MSAPSPSPSPSPASFATMPPPQVSSPAPDSSTSPSQSLSPATPSLAPLPLASPSPPPPLPLQTPASISPPAALPPPQSSSPSPASTTPTSTSAPPPPTRISPFDSHSPPSQTFGLTPPPASAQNSGPGNSSGTGAVAVGVVTGILLLGFIGIAIWCLTRQKERVSKSGGYDLPSALGSSPESDLSFIKIRSSAPLTQRASGGNTPSGLGNSRSLFAYEELIKATNNFSTQNLLGEGGFGCVYKGSLPDGREVAVKQLKIEGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDNRRLLVYDYVPNNTLYFHLHGEGRPLLDWANRVKIAAGAARGIAYLHEDCNPRIIHRDIKSANILLDYNFEARVSDFGLAKLAVDANTHVTTRVMGTFGCVAPEYVSSGKLTEKSDVYSFGVMLLELITGRKPVDVSQPVGEESLVEWARPLLNDALDSEEFESLIDPKLGKNYVESEMFCMIEVAAACVRYSSAKRPRMGQVVRAFDSLATCDISNGMRVGDSAQQSAEIRLFRRMAFGFGSQDYNVDFLSHTD 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0954 548 MobiDBLite consensus disorder prediction 28 43 - -
Ssu5g0954 548 MobiDBLite consensus disorder prediction 1 27 - -
Ssu5g0954 548 ProSitePatterns Protein kinases ATP-binding region signature. 233 255 IPR017441 GO:0005524
Ssu5g0954 548 MobiDBLite consensus disorder prediction 1 131 - -
Ssu5g0954 548 SUPERFAMILY Protein kinase-like (PK-like) 206 498 IPR011009 -
Ssu5g0954 548 PANTHER BNACNNG34790D PROTEIN 22 535 - -
Ssu5g0954 548 Pfam Protein tyrosine and serine/threonine kinase 229 498 IPR001245 GO:0004672|GO:0006468
Ssu5g0954 548 SUPERFAMILY beta-sandwich domain of Sec23/24 5 111 - -
Ssu5g0954 548 ProSiteProfiles Protein kinase domain profile. 227 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0954 548 MobiDBLite consensus disorder prediction 46 103 - -
Ssu5g0954 548 ProSitePatterns Serine/Threonine protein kinases active-site signature. 347 359 IPR008271 GO:0004672|GO:0006468
Ssu5g0954 548 MobiDBLite consensus disorder prediction 104 131 - -
Ssu5g0954 548 CDD STKc_IRAK 233 503 - -
Ssu5g0954 548 Gene3D Transferase(Phosphotransferase) domain 1 303 518 - -
Ssu5g0954 548 Gene3D Phosphorylase Kinase; domain 1 196 302 - -
Ssu5g0954 548 SMART serkin_6 227 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0954 548 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 22 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0954 Ssu-Chr5 27871747 27876575 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0954 124 547 Trihelix Transcription Factor Family AT5G38560 63.288 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Ssu5g0954 PK_Tyr_Ser-Thr 1.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0954 - - gmx:100799296 762.296