Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0951 ATGGATAGAGTCATCTATTtcttgttttgtattttatttctaatggcATTTGCTGGATCTATTTTCTTTGGTATTGCTACTAAAGATGACTTTCAAAATGGGTTGATGAAAAGATGGTATTTAAGACCAGATGATTctactattttctttaatctGAAAAGATCAGCTACTGCTgctttatttcattgtttgacaGCCTTAATGTTATATGGATTCTTTATTCCCATCTCTTTGTATGTGTCAATAGAAATTGTCAAAGTCCTTCAGAGCATTTTCATAAATCAAGATATCCATATGTACTACAAGGAAGCAGACAAACCAGCCCGAGCTCGTACTTCAAATTTGAATGAGGAGCTTGGCCAAGTTGATACAATACTTTCTGATAAAACTGGAACTCTGACCTGCAACTCAATGGAGTTCAACAAATGTTCTATTGCTGGGGTAGCTTATGGCCCTGGTGCTACAGAGGTTGAGAAGGCCATGGATAGAAGAAAAGGTTCATCTATTCATGAGCATGATATTAAATCAGAAGCAGATGACATTAGGGGTTCGCTAGATAAGAAGGGACTCATTAAAGGTTTTAACTTTTCTGACGAAAGAATAATAAATGGAAATTGGGTTAATGAGCCTCATGCCGATGTTATCCAGAAGTTTTTTCGCCTATTGGCAGTCTGTCATACAGCCATACCAGAAGTGGATGAAGACACAGGAAATGTCTCATATGAGGCTGAATCACCAGATGAAGCAGCATTTGTGATTGCAGCAAGAGAACTTGGTTTTGAATTCTACAAAAGAGGTCAGACTAGTTTATCAACATATGAGTTGGATCCAGTTTCTGGCAAGAAAGTTGAAAGGAAATACAAGCTTCTCAAAGTTTTAGAATTCAATAGCTCAAGGAAGCGAATGTCAGTGATAgtggaagatgaagaaggaaaaattttgCTTCTTTGCAAAGGTGCAGACAGTATCATGTTTGAAAGGCTTGCCAAGAATGGGAGGGAGTTTGACGAAAAAACCATGGAGCATGTGCATGAGTATGCTGATGCAGGTCTGAGAACCCTTATACTGGCCTATCGTGAACTTGATGCAGAAGAATACAAGGACTTTGATAACAAATTCTCTAAGGCCAAGAATTTAGTTAGTGCTGATCAGGAAATACTGATTGAAGAAGTATCAGATAAGATTGAGAAGAACCTAATCCTTCTTGGTGCCACTGCTGTAGAGGACAAGCTCCAAGATGGGGTTCCTGATTGCATTGACAAGCTTGCCCAAGCAGGAATTAAAATTTGGGTTTTGACTGGGGACAAAATGGAGACTGCAATCAATATTGGTTTTGCTTGTAGTTTGCTTAGACAAGGAATGAAGCAGATTATAATTCATTTGGATAGTCCGGAAATTCAAGCACTAGAGAAGGATGGGGACAAGATGGCTATTGCCAagGCATCAAGGCAAAGTGTCCTCTTTCAGATATCTGAAGGTGCTGCACAACTCACTGCATACAGAGGCAGCTCTCAGAAGGCATTTGCTCTGATTATTGATGGAAAATCACTTGTTTATGCATTAGAAGATGATATGAAGAACATGTTTCTAGAGCTAGCGATTCATTGTGCATCTGTTATTTGCTGTCGCTCATCTCCAAAGCAGAAGGCATTGGTCACTAGATTGGTCAAATTTGAAACTGGCAAAACAACATTAGCTATTGGTGATGGAGCTAACGATGTGGGAATGCTTCAAGAAGCAGATATAGGGGTTGGTATAAGTGGTGTTGAAGGAATGCAGGCAGTTATGTCTAGTGATATTGCAATTGCACAATTCCGGTATTTGGAACAGTTACTTCTGGTGCATGGGCATTGGTGTTACCGGAGGATCTCATCTATGATATGCTATTTTTTCTACAAGAATATCACATTTGGTTTTACTCTATTCTTATATGAGGTGTATGCATCATTCTCTGGACAACCTGCATACAATGACTGGTTTTTGTCTCTCTATAATGTCTTCTTTTCATCACTTCCTGTGGTTGCACTTGGGGTGTTTGACCAGGATGTATCTGCTCGGTACTGCCTGAAGTTTCCTTTGTTATATCAAGAAGGAGTACAGAATGTCCTTTTCAGCTGGCGTCGAATACTCAGCTGGATGCTTAATGGATTTATCAGTGCCTTAATAATATTCTTCTTCTGCACAAAAGCAATGGAGCTCCAGGCCTTCGATGTGGAGGGGAGAACTGCTGGAAAGGATATACTGGGAGCAACAATGTATACTTGTGTAGTTTGGGTTGTAAACTTGCAAATGGCACTAGCTATAAGTTACTTCACCTTGATCCAACATTTTTTCATCTGGGGTTCCATTGTTTTCTGGTATCTTTTTCTCCTGGTATATGGAGCAATGCCTCCGCACTTTTCTGCAACTGCTTACAAAGTCTTCGTTGAAGCTCTTGCTCCTTCCCCTTCCTATTGGATTGTGACATTCTTTGTGGTGATCACAACCCTTATACCATACTTCTCATACGCAGCAATTCAGATGTGGTTCTTCCCCATGTATCATGAAATAGTTCAATGGATAAGGTATGACGGGAAGATTAAGGATCCTGGATTTTGTGATAGGGTGCGGCAGAGATCATTGCGGCCAACAACTGTGGGTTCAACAGCGCGCTTAGCTGCTAAGGCTCACCACGTTAGAGACAGAAATGTTAACCGTAAATAA 2703 0.3903 MDRVIYFLFCILFLMAFAGSIFFGIATKDDFQNGLMKRWYLRPDDSTIFFNLKRSATAALFHCLTALMLYGFFIPISLYVSIEIVKVLQSIFINQDIHMYYKEADKPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFNKCSIAGVAYGPGATEVEKAMDRRKGSSIHEHDIKSEADDIRGSLDKKGLIKGFNFSDERIINGNWVNEPHADVIQKFFRLLAVCHTAIPEVDEDTGNVSYEAESPDEAAFVIAARELGFEFYKRGQTSLSTYELDPVSGKKVERKYKLLKVLEFNSSRKRMSVIVEDEEGKILLLCKGADSIMFERLAKNGREFDEKTMEHVHEYADAGLRTLILAYRELDAEEYKDFDNKFSKAKNLVSADQEILIEEVSDKIEKNLILLGATAVEDKLQDGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQIIIHLDSPEIQALEKDGDKMAIAKASRQSVLFQISEGAAQLTAYRGSSQKAFALIIDGKSLVYALEDDMKNMFLELAIHCASVICCRSSPKQKALVTRLVKFETGKTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIAIAQFRYLEQLLLVHGHWCYRRISSMICYFFYKNITFGFTLFLYEVYASFSGQPAYNDWFLSLYNVFFSSLPVVALGVFDQDVSARYCLKFPLLYQEGVQNVLFSWRRILSWMLNGFISALIIFFFCTKAMELQAFDVEGRTAGKDILGATMYTCVVWVVNLQMALAISYFTLIQHFFIWGSIVFWYLFLLVYGAMPPHFSATAYKVFVEALAPSPSYWIVTFFVVITTLIPYFSYAAIQMWFFPMYHEIVQWIRYDGKIKDPGFCDRVRQRSLRPTTVGSTARLAAKAHHVRDRNVNRK 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0951 900 ProSitePatterns E1-E2 ATPases phosphorylation site. 128 134 IPR018303 -
Ssu5g0951 900 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 895 - -
Ssu5g0951 900 SFLD C1.7: P-type atpase like 110 618 - -
Ssu5g0951 900 SUPERFAMILY HAD-like 121 622 IPR036412 -
Ssu5g0951 900 SUPERFAMILY Calcium ATPase, transmembrane domain M 1 845 IPR023298 -
Ssu5g0951 900 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 201 404 IPR023299 GO:0000166
Ssu5g0951 900 Gene3D - 403 607 IPR023214 -
Ssu5g0951 900 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 1 852 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Ssu5g0951 900 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 536 649 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu5g0951 900 PRINTS P-type cation-transporting ATPase superfamily signature 567 586 - -
Ssu5g0951 900 PRINTS P-type cation-transporting ATPase superfamily signature 126 140 - -
Ssu5g0951 900 Pfam Phospholipid-translocating P-type ATPase C-terminal 595 845 IPR032630 -
Ssu5g0951 900 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 895 - -
Ssu5g0951 900 CDD P-type_ATPase_APLT_Dnf-like 1 727 - -
Ssu5g0951 900 Gene3D - 260 402 IPR023299 GO:0000166
Ssu5g0951 900 Pfam Cation transport ATPase (P-type) 235 328 - -
Ssu5g0951 900 SFLD p-type atpase 110 618 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0951 Ssu-Chr5 27749393 27754471 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0951 1 893 Primary Pumps ATPases AT1G68710 73.564 0.0 1412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0951 K01530 - gmx:100781421 1647.48