Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0947 ATGATGGATTCTGTTCTCTCCTTGGATACTCCCACTAATGCCTTCCCACACCCACCACCAGGCATTTCCTCTTCCGGACCCCCATCACATTCACAACCCTCACTCCCAACTTTATTGGTTCCCAAGCCCGAACCCTTCTGGGACACTCAGGACGACAACCCGAACGAACTTGACCTTCTCTCCGAGTTCAACCGCGTCTCCGAGTTATTCCACTTCGCCTTCGGAGGCGGCAGCTTTGTCGTTCCCCCGGACCTAGGCCCTTTTGTAGCTTCCAATGTTGCATGCCCCGACCCGAATATAGTTCCCCCAGACCCAAACCCAGTGGTTCCCCCAGACCTGTACTCAGTGGTTCACCCGGACCCTAATTCGCCCTCCGGAGATGACTCACGAGCCATCGTTCCGGTGCCGGCGGCAGAAGGGACGGTGGCCGTTCCGAGGCCGAAACAGAGCCGGCGGAAGGAGCTGGTGAGAGTGACGGATCTGTCAGCGAGGGACGAGGCACACTTCCGGGAGATGGTGAGAAGGACGCGGCTGGTGTACGACTCGCTTCGCGTGTTGACTGCGGTGGAGGAGGAGAAGCGAGCTGCCTCGATGGCTGCAGCAGCGGCGGCGGCTCCGCCGGTGGAGGGGCAAGCACAGGTGGAGGGGAAAGGGCGGCGTCTCCGCGGGGACCTGCGAGCCGCAGGACTGATGCGACAGCGTGGACTGTGGCTGAATCGCGACAAACGGATCGTTGGGGCCATCCCTGGAATCTGGGTTGGGGATTTATTCCTTTTTCGGATGGAGTTGTGTGTGGTTGGATTGCACGGTCAGATACAGGCTGGCATAGATTATCTTCCCGGAAGCATGAGCTCGACTGGGGAGCCTATAGCCACCAGTGTCATTGTTTCTGGTGGTTACGAGGATGATATGGATGATGGTGAGGTTATAGTTTACACTGGCCATGGAGGGCAGGAGAAGAATTCGTCGAAGCAGATTGCTCATCAGAAGTTGGAGGCAGGGAACCTTGCATTGGAGAGGAGTATGCATTATGGCATTGAGGTGAGGGTTATTCGAGGAATGAAGTACGAGGGGAGTGCCTCTGGTTCTGGTAAGGTTTATGTGTATGATGGGGTGTATAGGATTGTTGATTGCTGGTTTGATGTGGGGAGGTCTGGTTTTGGAGTTTACAAGTTTAAGCTTTGGAGGATTGAGGGGCAGGCTAGGATGGGTAGTGCTATTTTGAAGGATGCTAGGAATATTAAGAAGAGTGGGTTGGATTTTAATCCTGTGTCTTGTCTTTCTGCTGATCTGTCAAACAAGAAGGAGAATGTTGCGGTTCGGCTTTTTAATGACATAGATGACGATCGGAGTCCTCTTTGCTATGAGTATCTTGCGAGGACTAGTTTTCCACAGTTTGTGTTTCATCAGAGTGGGAAAGCTACTGGTTGTGACTGTGTGGATGGTTGTGGTGATGGATGCTTTTGTGCTATGAAAAATGGGGGCGAGTTTCCTTATACTCTGCAGGGGCATCTCGTGAGGGGGAAGCCTTTGATTTTTGAATGTGGCCCTTTCTGCGCTTGTCCACCTCATTGTCGCAATCGTGTTGCACAGAAGGGGCTGAAACATAGGTTGGAAGTGTTTAGGTCTCAGCAGACAGCTTGGGGAGTTAGGTCCTTGGACCTTATTCAAGCTGGTTCTTTTATCTGCAAGTTTGCAGGGGTTGTTTTGACTAGGGAGCAAGCGCAACTCTTGACAATGAATGGTGATTCATTGATATATCCTAATCGGTTTTCGGAAAGATGGGCAGAATGGGGGGATTTGTCTCAGATACACCCAGATTATGTGCGTCCATCGTATCCATCAATTCCTCCTTTAGATTTTTCTCTGGATGTGTCAACAATGAGGAATGTTGCTTGCTATATGAGCCATAGTTCAACTCCAAATGTCTTGGTTCAGTTTGTTCTGTATGATCACAACAATTTGATGTTCCCGCACCTTATGCTATTTGCAATGGAGAACATCCCTCCCATGAGAGAGCTCAGCCTTGATTATGGTGTAGCTGATGAGTGGACAGGCAAGCTCTCTATATGTAACTGA 2079 0.5113 MMDSVLSLDTPTNAFPHPPPGISSSGPPSHSQPSLPTLLVPKPEPFWDTQDDNPNELDLLSEFNRVSELFHFAFGGGSFVVPPDLGPFVASNVACPDPNIVPPDPNPVVPPDLYSVVHPDPNSPSGDDSRAIVPVPAAEGTVAVPRPKQSRRKELVRVTDLSARDEAHFREMVRRTRLVYDSLRVLTAVEEEKRAASMAAAAAAAPPVEGQAQVEGKGRRLRGDLRAAGLMRQRGLWLNRDKRIVGAIPGIWVGDLFLFRMELCVVGLHGQIQAGIDYLPGSMSSTGEPIATSVIVSGGYEDDMDDGEVIVYTGHGGQEKNSSKQIAHQKLEAGNLALERSMHYGIEVRVIRGMKYEGSASGSGKVYVYDGVYRIVDCWFDVGRSGFGVYKFKLWRIEGQARMGSAILKDARNIKKSGLDFNPVSCLSADLSNKKENVAVRLFNDIDDDRSPLCYEYLARTSFPQFVFHQSGKATGCDCVDGCGDGCFCAMKNGGEFPYTLQGHLVRGKPLIFECGPFCACPPHCRNRVAQKGLKHRLEVFRSQQTAWGVRSLDLIQAGSFICKFAGVVLTREQAQLLTMNGDSLIYPNRFSERWAEWGDLSQIHPDYVRPSYPSIPPLDFSLDVSTMRNVACYMSHSSTPNVLVQFVLYDHNNLMFPHLMLFAMENIPPMRELSLDYGVADEWTGKLSICN 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0947 692 Pfam SAD/SRA domain 245 400 IPR003105 -
Ssu5g0947 692 Gene3D SET domain 405 692 IPR046341 -
Ssu5g0947 692 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 55 692 IPR025794 GO:0016571
Ssu5g0947 692 ProSiteProfiles YDG domain profile. 246 396 IPR003105 -
Ssu5g0947 692 SUPERFAMILY PUA domain-like 227 409 IPR015947 -
Ssu5g0947 692 ProSiteProfiles SET domain profile. 536 679 IPR001214 GO:0005515
Ssu5g0947 692 SMART preset_2 428 520 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Ssu5g0947 692 Pfam Pre-SET motif 432 528 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Ssu5g0947 692 Gene3D - 243 404 IPR036987 -
Ssu5g0947 692 SMART G9a_1 241 400 IPR003105 -
Ssu5g0947 692 Pfam SET domain 548 679 IPR001214 GO:0005515
Ssu5g0947 692 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 36 689 - -
Ssu5g0947 692 MobiDBLite consensus disorder prediction 1 53 - -
Ssu5g0947 692 SMART set_7 536 685 IPR001214 GO:0005515
Ssu5g0947 692 SUPERFAMILY SET domain 437 690 IPR046341 -
Ssu5g0947 692 ProSiteProfiles Pre-SET domain profile. 475 533 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Ssu5g0947 692 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 36 689 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0947 Ssu-Chr5 27497892 27499970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0947 144 681 Su(var)3-9 homologs AT5G04940 36.746 9.45e-101 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu5g0947 SAD_SRA 3.5e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0947 K11420 - gmx:100785015 1097.03