Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0933 ATGGAGAAACTGAAACTATCTGCTAATTATGATCCTGATGCCAGCAGTGATCAGGCAGGTTCATTTCCAATATTCGAACTGCGAGAGAGTCAAAATGTTGGACAGCAGAGCAGTAGAAGAGGTGAAGATGATACAAAAGCTGCAAGATTGGATGGAGGTTCTGTAATTGCTCCCTCTAATTCTGCAAGCAGTAGGGAACCTGTCAACAAGTGGATGGCATTTGCTAGGAAGCCTGCTTTCACAGTTGATGGCAACTCAGCAACAAAGGATAAAAGTATAACTGAAGACAATCACTTGAGGAATCGTCTAAAAGAGCAGTCATCTTCTGCTCATCAAATTTTAACTGAGGCAACCATAGCTGAGAGAACTGCTGAATGGGGTCTTGTGGTGAACTCAGCGAATTTCAAAGCAATGGGGGGAGAGAATACAAGTGCCTCTTTTGAAGGTGACAGAAGCAGAAACTTGTCAGATAGATTTGTTGAATCAACAAGGACGTCCGGGGAGTCAAATTACGGATCCAAGTCATCATCAGGGGTGTTCCTAAGGGTGTCACAAGAGTTGAAGGAAGCACTGGCGACGCTGCAACAGACATTTGTTGTCTCAGATGCAACCAAACCAGACTGCCCAATCATGTACGCCAGCAGTGGCTTTTTTACCATGACTGGCTATTCTTCGAAGGAGATTATTGGGAGGAATTGTCGATTTCTTCAGGGGCCTGAGACTGACAAAAATGAAGTGGCGAAAATTCGGGATGCAATTAGAAATGGGAAAAGTTATTGTGGCAGACTTTTAAACTACAAGAAAGATGGAACTCCATTCTGGAATCTTCTCACTGTCACCCCCATCAGAGATGACCTTGGCAATACTATCAAATTCATTGGAATGCAGGTTGAGGTGAGCAAGTACACAGAAGGCGTGAATGAAAAGGCATTACGACCAAATGGATTGCCTAAGTCATTAATTCGTTATGATGCTCGTCAAAAGGAGAAAGCTTTGGGTTCCATCACTGAGGTTGTCCAAACTGTTAAGGACCCAAAATCCATTATCAGGGACATGAATGATGATACTGCCACCAAGCATGAAGAGCAAGAGAAATTCAATTTTGACTTTGTTTTGCCAAAGTCTGTTGATATTGGGAATACAAGCACACCTGGTAGACAACCTTCTCCACTGAATATCCAACGCATGAGTTCTAGTCAAGATAAGAGCAAGTCATCACGAAAATCAGCACGGATTTCTTTCAAGGgTTTTAAAGGGAGAGATGAGGAGAAGCCCACTGTTGAACCTGAGGTTTTGATGACAAAGGAAATTGAGTGGTCTAACAATTGGGAGCATTCACAAAGAGAGAGGGACATAAGACAGGGAATTGATTTAGCAACCACATTGGAGCGGATAGAAAAAAACTTTGTGATTTCTGATCCTAGACTACCAGATAACCCAATtATATTTGCATCTGATAGCTTTCTTGAACTTACGGAATATACGCGAGAAGAAATTTTGGGACGAAATTGTCGGTTTCTTCAAGGACCAGAAACAGATCAGGCAACTGTTGCCAAGATAAGGGATGCTATCAGAGAACAGAAGGAAATCACTGTTCAGTTGATCAACTATACTAAGAGTGgAAAGAAGTTCTGGAATTTGTTTCACTTGCAACCTATGCGTGACCAAAAGGGTGAACTTCAATACTTCATTGGTGTTCAACTAGATGGAAGTGATCATGTAGAACCCTTAAAAAACCGCCTGTCTGAGACAGCTGAGCAACAAAGTGCTAAGTTGGTGAAAGCCACTGCAGAAAATGTTGATGAAGCTGTCCGAGAACTTCCAGATGCCAACTTGAGACCAGAAGATTTGTGGGCAATTCATTCCCAACCTGTCTTTCCACGACCTCACAAAAAGGACAATCCTTCTTGGATAGCAATACAAAAGGTTAGGAGGTGTGATCGTCTCAaagtagtatttatttataaatttgaatatATAGCTGCAAGAGGCGAAAAAATTGGATTGCAACATTTTTTGCCCGTAAGGCCGTTGGGTTGTGGAGATACCGGCAGTGTTCATTTGGTGGAACTCAAAGGTACTGGTGAATTATATGCAATGAAGGCAATGGAAAAATCTGTAATGCTAAATCGTAATAAGGTTCACCGATCATGCGTTGAGAGAGAGATTATATCATTATTGGATCATCCTTTTCTTCCAACACTATACACCTCATTTCAGACTTCTACACATGTATGTTTGATTACTGACTTCTGCCCTGGGGGAGAGTTGTTTGCATTGCTTGACAAGCAACCAATGAAGATTTTCAAAGAAGAATCAGCAAGATTCTATGCAGCAGAGGTTGTCATTGGTTTGGAATATCTCCACTGTTTAGGTATAATTTATCGTGACTTAAAGCCTGAAAATATCTTACTTCAGAAGGATGGTCATCTTGTATTGACTGATTTTGATCTATCATTTATGACATCTTGTAAACCCCAGGTTGTGAAGCAATCACTAGCTGGTAACAGAAGATCACGAAGTCAACTACCACCAACATTTGTTGCGGAGCCAGTTACACAATCAAACTCATTTGTTGGAACTGAAGAATACATTGCCCCTGAAATTATAACTGGAGCTGGGCATACTAGCGCTATAGACTGGTGGACCCTTGGTATCTTGTTGTATGAGATGCTCTATGGTCGTACACCATTTAGAGGAAAGAATAGACAGAAGACATTTTCCAACATCTTACACAAGGATCTTACCTTTCCAAGCAGCATTCCGgCTAGTCTTGCAGCTAGGCAGTTGATTAATGCACTATTGCAAAGAGATCCAACAAGTCGTCTAGGTTCAACCACCGGTGGCAATGAAATCAAACAACATCCTTTTTTCCGTGGAATCAATTGGCCTCTAATCCGCAACATGATTCCACCCCCAGTAGATGTTCCTCTTCAGTTGATAGGAAAAGATCCAATGGCAAAGGATATTAAGTGGGAGGATGATGGGGTGCTAGTTAGCTCGATTGATATGGATATGTTTTGA 3024 0.4134 MEKLKLSANYDPDASSDQAGSFPIFELRESQNVGQQSSRRGEDDTKAARLDGGSVIAPSNSASSREPVNKWMAFARKPAFTVDGNSATKDKSITEDNHLRNRLKEQSSSAHQILTEATIAERTAEWGLVVNSANFKAMGGENTSASFEGDRSRNLSDRFVESTRTSGESNYGSKSSSGVFLRVSQELKEALATLQQTFVVSDATKPDCPIMYASSGFFTMTGYSSKEIIGRNCRFLQGPETDKNEVAKIRDAIRNGKSYCGRLLNYKKDGTPFWNLLTVTPIRDDLGNTIKFIGMQVEVSKYTEGVNEKALRPNGLPKSLIRYDARQKEKALGSITEVVQTVKDPKSIIRDMNDDTATKHEEQEKFNFDFVLPKSVDIGNTSTPGRQPSPLNIQRMSSSQDKSKSSRKSARISFKGFKGRDEEKPTVEPEVLMTKEIEWSNNWEHSQRERDIRQGIDLATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVAKIRDAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLKNRLSETAEQQSAKLVKATAENVDEAVRELPDANLRPEDLWAIHSQPVFPRPHKKDNPSWIAIQKVRRCDRLKVVFIYKFEYIAARGEKIGLQHFLPVRPLGCGDTGSVHLVELKGTGELYAMKAMEKSVMLNRNKVHRSCVEREIISLLDHPFLPTLYTSFQTSTHVCLITDFCPGGELFALLDKQPMKIFKEESARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHLVLTDFDLSFMTSCKPQVVKQSLAGNRRSRSQLPPTFVAEPVTQSNSFVGTEEYIAPEIITGAGHTSAIDWWTLGILLYEMLYGRTPFRGKNRQKTFSNILHKDLTFPSSIPASLAARQLINALLQRDPTSRLGSTTGGNEIKQHPFFRGINWPLIRNMIPPPVDVPLQLIGKDPMAKDIKWEDDGVLVSSIDMDMF 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0933 1007 MobiDBLite consensus disorder prediction 377 427 - -
Ssu5g0933 1007 MobiDBLite consensus disorder prediction 401 427 - -
Ssu5g0933 1007 Gene3D Phosphorylase Kinase; domain 1 671 755 - -
Ssu5g0933 1007 TIGRFAM sensory_box: PAS domain S-box protein 480 571 IPR000014 -
Ssu5g0933 1007 TIGRFAM sensory_box: PAS domain S-box protein 209 300 IPR000014 -
Ssu5g0933 1007 Coils Coil 578 598 - -
Ssu5g0933 1007 ProSiteProfiles PAC domain profile. 528 582 IPR000700 -
Ssu5g0933 1007 PANTHER FLIPPASE KINASE 1-RELATED 137 1006 - -
Ssu5g0933 1007 SMART pac_2 260 302 IPR001610 -
Ssu5g0933 1007 SMART pac_2 531 573 IPR001610 -
Ssu5g0933 1007 CDD PAS 210 299 IPR000014 -
Ssu5g0933 1007 MobiDBLite consensus disorder prediction 377 400 - -
Ssu5g0933 1007 Gene3D PAS domain 443 607 - -
Ssu5g0933 1007 ProSiteProfiles PAC domain profile. 257 311 IPR000700 -
Ssu5g0933 1007 SMART pas_2 456 525 IPR000014 -
Ssu5g0933 1007 SMART pas_2 185 254 IPR000014 -
Ssu5g0933 1007 Gene3D Transferase(Phosphotransferase) domain 1 756 974 - -
Ssu5g0933 1007 Pfam PAS domain 477 569 IPR000014 -
Ssu5g0933 1007 Pfam PAS domain 204 300 IPR000014 -
Ssu5g0933 1007 MobiDBLite consensus disorder prediction 1 63 - -
Ssu5g0933 1007 ProSitePatterns Protein kinases ATP-binding region signature. 678 701 IPR017441 GO:0005524
Ssu5g0933 1007 CDD STKc_phototropin_like 670 981 - -
Ssu5g0933 1007 PANTHER BNAC03G12530D PROTEIN 137 1006 - -
Ssu5g0933 1007 SUPERFAMILY Protein kinase-like (PK-like) 656 986 IPR011009 -
Ssu5g0933 1007 Gene3D PAS domain 197 366 - -
Ssu5g0933 1007 SUPERFAMILY PYP-like sensor domain (PAS domain) 473 569 IPR035965 -
Ssu5g0933 1007 ProSiteProfiles PAS repeat profile. 183 256 IPR000014 -
Ssu5g0933 1007 Pfam Protein kinase domain 676 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0933 1007 SUPERFAMILY PYP-like sensor domain (PAS domain) 204 296 IPR035965 -
Ssu5g0933 1007 CDD PAS 477 569 IPR000014 -
Ssu5g0933 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 793 805 IPR008271 GO:0004672|GO:0006468
Ssu5g0933 1007 ProSiteProfiles PAS repeat profile. 454 527 IPR000014 -
Ssu5g0933 1007 ProSiteProfiles Protein kinase domain profile. 672 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0933 1007 SMART serkin_6 672 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0933 Ssu-Chr5 26138120 26179706 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0933 104 1006 AGC Kinase Gene Family AT5G58140 72.459 0.0 1310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Ssu5g0933 Pkinase 1.9e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0933 K20715 - gmx:100820096 1766.51