Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0932 ATGGCGACGCTGCTGAGAAAACTGTGCGAATCGGCGTCGCTGAAGCGATCCGGCTCCAATTCGAACCCGAACCCGAACCCATGCTCGGAACGCGCGCCTTCCCCTCTGGGCGCCTTCGACCCTCTCCCTCCCGACATACTCATGCAGATCGTGCGACTCTTGGGCCCCAAACAAGCTGCCAAACTCTGCCTCGTTAGCAAGTCCTGGCGATCCCTCGTCTCCGACAACGCCCTCTGGGCCCACTTCCTTGAAACCCACCACCCCCACACCGCGCTTTTCGCCGAAACCGCTTTGAGCTCTGGCTACCCCCTTCCGTCCTCGGATGCTCTGAACGTGCCACGTGTCTCGTTCCAGCATGTTTACGCCCTACGTGAACGACTCCCTCCTTCCGTTGTCATCGACGGGGGTTCTGGCTATTGCAAATTCGGTTGGAGCAAAGACGTGTTTCCTTCGGGGCGATTTGCGACATTTTTGGAATTTGGTAACGTTGAAACGCCTATGTATACTAGACTTCGGCATTTTTTTGCGACTATCTATAACAGGATGCAGGTGAAGCCAAGTTCTCAACCAGTTGTTGTTTCTATACCAATATGCCACTATGATGATACTGAATCAGCCAAAGCATCAAGACAGCAGCTTAAAGAAGCAATCTATACTGCCCTGTTTGACATGAATGTTCCTGCTGTTTGTGCTCTCAATCAGGGGACTTTAGCTCTGTATGCTGCAAAACAAACTTCCGGGATAGCTGTTAATATAGGTTTTCAAGTCACATCTATAGTTCCAAttttaaaTGGTAAAGTGATGCGAAAGGTGGGTGTGGAGGTTGTGGGGCTGGGAGCACTGAAACTTACTGGATTTCTTAGAGAACAAATGCAACAAAACAACATAAGTTTTGAATCTTTATACACTGTTTGCACACTGAAAGAGAAGCTATGTTATGTTGCTGTTGACTATGAAGCTGAGCTATTGAGAGATACACAAGCATCATTTGAAGCTGTAGAAGGGTTGTTTACACTCTCAAGAGAGCGGTTTCAAACAGGAGAGATCTTATTCCAGCCACGTCTTGCTGGGGTGCAAGCAATGGGTTTGCAGCAGGCCATCGCACTTTGTATGGATCATTGCTATTCTGCAGAATTAGCAGGCAACAATGATTGGTATAAGACTGTTGTCTTATCAGGGGGAACTGCATGTTTACCTGGTTTAGCagAAAGGTTAGAAAAGGAACTTCATTCGTTGCTTCCTCCTTATATGTCCAATGGAATTAGAGTCATACCTCCTCCTTTCGGTGTGGATACTGCATGGTTTGGTGGAAAAATTATTGGCAGTGTGAGTTATCCACCAAGTCtgataaatattcaaattttgtttgctGCAGAGGATGTcacttttatgtcaattaaGTCTTGA 1407 0.4606 MATLLRKLCESASLKRSGSNSNPNPNPCSERAPSPLGAFDPLPPDILMQIVRLLGPKQAAKLCLVSKSWRSLVSDNALWAHFLETHHPHTALFAETALSSGYPLPSSDALNVPRVSFQHVYALRERLPPSVVIDGGSGYCKFGWSKDVFPSGRFATFLEFGNVETPMYTRLRHFFATIYNRMQVKPSSQPVVVSIPICHYDDTESAKASRQQLKEAIYTALFDMNVPAVCALNQGTLALYAAKQTSGIAVNIGFQVTSIVPILNGKVMRKVGVEVVGLGALKLTGFLREQMQQNNISFESLYTVCTLKEKLCYVAVDYEAELLRDTQASFEAVEGLFTLSRERFQTGEILFQPRLAGVQAMGLQQAIALCMDHCYSAELAGNNDWYKTVVLSGGTACLPGLAERLEKELHSLLPPYMSNGIRVIPPPFGVDTAWFGGKIIGSVSYPPSLINIQILFAAEDVTFMSIKS 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0932 468 SUPERFAMILY Actin-like ATPase domain 245 447 IPR043129 -
Ssu5g0932 468 Gene3D - 131 444 - -
Ssu5g0932 468 PANTHER MACRONUCLEAR ACTIN 83 447 - -
Ssu5g0932 468 Pfam F-box-like 42 81 IPR001810 GO:0005515
Ssu5g0932 468 SUPERFAMILY F-box domain 32 105 IPR036047 GO:0005515
Ssu5g0932 468 SMART actin_3 128 455 IPR004000 -
Ssu5g0932 468 MobiDBLite consensus disorder prediction 14 35 - -
Ssu5g0932 468 CDD NBD_sugar-kinase_HSP70_actin 131 275 - -
Ssu5g0932 468 PANTHER ACTIN 83 447 IPR004000 -
Ssu5g0932 468 Gene3D - 36 127 - -
Ssu5g0932 468 Pfam Actin 177 444 IPR004000 -
Ssu5g0932 468 Gene3D - 235 432 - -
Ssu5g0932 468 SUPERFAMILY Actin-like ATPase domain 129 250 IPR043129 -
Ssu5g0932 468 Gene3D Actin; Chain A, domain 4 278 360 - -
Ssu5g0932 468 ProSiteProfiles F-box domain profile. 36 82 IPR001810 GO:0005515
Ssu5g0932 468 SMART fbox_2 42 82 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0932 Ssu-Chr5 26049726 26061938 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0932 177 444 Cytoskeleton Gene Families AT3G12110 32.014 1.35e-36 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0932 K16616 - gmx:100804254 797.349