Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0930 ATGAGTTCGTTCTCCATCACGCGGAAAAAGACGCCGTTCCAGAAGCATAGAGAAGAGGAGGAGGCAAAGAAGAAAAGAGCAGAAGATGAGACTGCTCGCCTATATGCTGAGTTTGTAGAGTCATTTCAAGGAGATAGTGCTCCTGGGTCAAAAACTTTTGTTCGAGGAGGAACGATTAATCCCAATGATAGATTTAAAGATGATTCTGAGGGTGAAAAGTCCAAAGATGGGGTATCTGGTCCAAAGAAGGGAAGTAGatATGTACCATCTTTTATTCCACCTCCAATGGCAACCAAGGGGAAAGAATCTGAAAGGAAAaaagaggaggaaaagccaaaggagaaagagaaagggaagTCAAGAAACATTGATCATTTTATGGAGGAGCTAAAGCATGAGCAAGAGATGAGGGAGAGGCGAAATCAAGAACGTGAACATTGGCGTGATGGGCGTCATGCAGAACATTCTACTTCCAGTCGCTTTGACGAACTGCCTGATGACTTTGACCCAAGTGGAAAACTTCCAGGATCATTTGACGATGGTGATCCTCAAACTACAAATCTTTATGTTGGAAATCTCTCACCCAAGgttgatgaaaattttcttctccGTACTTTTGGAAGGTTTGGACCTATTGCTAGTGTGAAGATTATGTGGCCAAGGACAGAGGAGGAGCGAAGGCGGCAAAGAAACTGTGGCTTTGTAGCTTTCATGAACAGAGCTGATGGACAGGCAGCAAAAGACGAAATGCAAGGAGTTGTGGTTTATGAGTATGAATTGAAAATTGGATGGGGAAAGTCTGTTGCCCTCCCATCGCAAGCACTACCTGCACCCCCCCCAGGGCATATGGCCATCAGGAGTAAGGAGGGTAGTACCGTGATCTTGTCTGGTCCTTCAGGTCCTCCAGTATCATCTGTGCCCAATCAGAATTCTGAACTGGTTTTAACTCCTAATGTTCCTGATATAATGGTTACGCCTCCTGAGGATGAACATCTAAGGCATGTAATTGATACAATGGCTTTATATGTCCTGGATGGAGGATGTGCTTTTGAACAAGCTATTATGGAGAGGGGTCGTGGCAATCCTCTTTTCAACTTCTTGTTTGTTCTTGGCTCAAAGGAACATACCTACTACGTTTGGAGACTCTACTCATTTGCCCAGGGTGATACTCTTCAAAGATGGAGGACTGAACCTTTCATCATGATAACGGGTAGTGGAAGATGGATTCCTCCCCCATTACCAATATCAAAAAGTCCAGAACATGAAAAGGAGTCTGGTTCCACACATGCTGGAGGAAGAAGCAGGCGTGTAGAGCCTGAAAGAACACTGACTGATGTACAGAGGGATGAGTTTGAGGATATGCTGCGTGCTTTAACATTAGAGAGGAGCCAGATAAAAGAGGCTATGGGGTTTTCTTTAGATAATGCTGATGCAGCTGGTGAGATAGTTGAAGTTTTGACTGAATCCTTGACACTTAAAGAAACCCCTATTCCAACTAAAATTGCAAGGCTTATGCTTGTCTCTGATATTCTTCATAATAGTAGTGCTCCCGTAAGAAATGCATCAGCATATCGCACCAAGTTTGAAGCAACATTACCGGACATAATGGAGAGTTTTAATGACTTGTATCGTAGCATAATGGGCCGTATTACTGCTGAAGCCCTAAAGGAACGAGTGCTGAAAGTTTTACAAGTGTGGGCAGACTGGTTTCTCTTTTCGGATGGTTATGTGAATGGCTTAAGAGCCACTTTCCTTCGACCTGGGAACTCTGGTGTaattccattccattccataTGTGGTGATGCACCTGAGATTGAGCAGAAGAACACTTCCGAAGATACAGTTATTGGTGGCAAGACCAACCAAGATGCTGCATTGGCAATGGGTCGAGGGGCTGCAATGAAGGAGCTAATGAATCTTCCTCTTGCTGAGCTGGAAAGACGGTGCCGACACAATGGATTGTCACTTGTTGGTGGTAGAGAAATGATGGTTGCACGGTTGCTAAGTCTTGAAGAGGCAGAAAAGCAGAGAGGTTATGAACTAGATGACGAATTGAAATATGCCCACAACCAAGTGAGTTCTGGGAAATATTCAAGTAATCGGCGAGAAACAAGTGCTGAACCTGAATCAGTTGGACTGTCTGCATGGAACCACTATGGGGTTGAAGATTTGCAGTCACAGGGCAGAAGTTCTGTATCTTTATCCCCAACCATTCCTATTCCACAGCCTGAACTTAAAGCCTTCACTAAAAAGGAGAAGAGTGATCCAGTTTTGCCAGCCTCTAAATGGGCTCGGGAGGATGATGAGAGTGATGATGAACAAAGTAGAAGTGGAAAAAATCTTGGCTTAAGCTACTCATCTTCTGGTAGTGAGAATGTGGGTGATGATCTTGTTAAAGCTGATGAATCAGAGTCTGCAGCTGATACAAGTTTTTCAGCTCATGCTGACAGTGGAATGAATGAAGAGCAGAGGCAAAAGCTGAGACGCCTGGAGGTTGCTTTAATTGAATACCGTGAGACTCTTGAAGAAAGGGGAATTAAAATTTGGAGGAAATTGAGAAGAAAGTTCAGTCGCATAGGAAACGGCTGCAAGCGGAGTATGGGTTATCAGATTCTGGTGAAGATGGTCAAGGCAATAGAAGAACTTCAGAGAGGAGGGATAGGCATGATGTTTCAAGGAAGCGACACCGTAGCCAAAGTCCAAGTGCTAGTCCACAGCCAAAATTATCAGGCAAAGACAGAGATAGAGAACACGATTTAG 2760 0.4297 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDSAPGSKTFVRGGTINPNDRFKDDSEGEKSKDGVSGPKKGSRYVPSFIPPPMATKGKESERKKEEEKPKEKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRHAEHSTSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGSTVILSGPSGPPVSSVPNQNSELVLTPNVPDIMVTPPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPPLPISKSPEHEKESGSTHAGGRSRRVEPERTLTDVQRDEFEDMLRALTLERSQIKEAMGFSLDNADAAGEIVEVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDGYVNGLRATFLRPGNSGVIPFHSICGDAPEIEQKNTSEDTVIGGKTNQDAALAMGRGAAMKELMNLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYAHNQVSSGKYSSNRRETSAEPESVGLSAWNHYGVEDLQSQGRSSVSLSPTIPIPQPELKAFTKKEKSDPVLPASKWAREDDESDDEQSRSGKNLGLSYSSSGSENVGDDLVKADESESAADTSFSAHADSGMNEEQRQKLRRLEVALIEYRETLEERGIKIWRKLRRKFSRIGNGCKRSMGYQILVKMVKAIEELQRGGIGMMFQGSDTVAKVQVLVHSQNYQAKTEIENTI 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0930 919 ProSiteProfiles CID domain profile. 443 588 IPR006569 -
Ssu5g0930 919 PANTHER RNA PROCESSING PROTEIN LD23810P 5 856 - -
Ssu5g0930 919 MobiDBLite consensus disorder prediction 1 185 - -
Ssu5g0930 919 MobiDBLite consensus disorder prediction 417 442 - -
Ssu5g0930 919 Gene3D - 96 269 IPR012677 -
Ssu5g0930 919 SMART 558neu5 450 585 IPR006569 -
Ssu5g0930 919 MobiDBLite consensus disorder prediction 61 80 - -
Ssu5g0930 919 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 260 IPR000504 GO:0003723
Ssu5g0930 919 Coils Coil 820 840 - -
Ssu5g0930 919 SUPERFAMILY ENTH/VHS domain 448 584 IPR008942 -
Ssu5g0930 919 ProSiteProfiles SAP motif profile. 637 671 IPR003034 -
Ssu5g0930 919 SMART surpneu2 333 387 IPR000061 GO:0003723|GO:0006396
Ssu5g0930 919 Pfam CID domain 450 578 IPR006569 -
Ssu5g0930 919 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 267 IPR000504 GO:0003723
Ssu5g0930 919 SUPERFAMILY RNA-binding domain, RBD 179 274 IPR035979 GO:0003676
Ssu5g0930 919 Gene3D - 443 589 IPR008942 -
Ssu5g0930 919 Coils Coil 17 37 - -
Ssu5g0930 919 SMART rrm1_1 187 263 IPR000504 GO:0003723
Ssu5g0930 919 MobiDBLite consensus disorder prediction 99 169 - -
Ssu5g0930 919 MobiDBLite consensus disorder prediction 743 823 - -
Ssu5g0930 919 MobiDBLite consensus disorder prediction 746 776 - -
Ssu5g0930 919 Gene3D - 819 858 - -
Ssu5g0930 919 ProSiteProfiles SURP motif repeat profile. 335 378 IPR000061 GO:0003723|GO:0006396
Ssu5g0930 919 PANTHER - 5 856 - -
Ssu5g0930 919 MobiDBLite consensus disorder prediction 11 35 - -
Ssu5g0930 919 CDD RRM_SR140 185 268 IPR035009 -
Ssu5g0930 919 SUPERFAMILY Surp module (SWAP domain) 309 390 IPR035967 GO:0003723|GO:0006396
Ssu5g0930 919 Coils Coil 448 468 - -
Ssu5g0930 919 MobiDBLite consensus disorder prediction 411 442 - -
Ssu5g0930 919 MobiDBLite consensus disorder prediction 777 793 - -
Ssu5g0930 919 Pfam Surp module 333 385 IPR000061 GO:0003723|GO:0006396
Ssu5g0930 919 Gene3D Surp module 321 390 IPR035967 GO:0003723|GO:0006396
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0930 183 263 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 3.60e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0930 K12842 - gmx:100776093 1553.11