Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0928 atGGGCAGTAGTGACATGGACAAAACCCCAAAAGAGAAGGAGTCTAAGACACCTCCAGCTACGTCACAGGAGCAGTCCCCAACAACTGGCATGGCAACAATTAATCCTGACTGGTCTAACTTTCagACATATTCTCCTATAGCTCCACATGGGTTCTTGGCATCAAGTCCCCAAGCCCACCCATATATGTGGGGCGTCCAGCATATTATGCCTCCCTATGGCACCCCTCCACATCCCTATGTTGCAATGTATCCCCATGGTGGCATATATGCTCATCCATCCATTCCTCCGGGATCTTATCCTTTCAGTCCTTTTGCCATGGCTTCTCCAAATGGTATTGCAGATGCTTCGGGAAATACCCCAGGCAGCATTGAAGTTGGTGGTAAACCTCCTGAGGTGAAGGAAAAATTACCAGTCAAAAGATCAAAAGGAAGTGCTGTGGGTGGTTTGAATATGTGGATTACGggaaaaaataatgaacttGGTAAAACACCAGGAGAATCTGCTAATGGGATTCATTCCAAAAGTGGTGAGAGTGCAAGTGAAGGTACTAGTGAAGGAAGTGATGAGAATTCCCAAAATGACTCTCAATTGAAATCCGGGGAGAGGCAAGACTCTTTTGAAGATGAACCATCTCAAAATGGCAGTTCAGTGCATGCTCCTCAAAATGGGGTACATAATAGGCCTCAGACAGTTAACCAAACTATGTCTATCATACCTATATCTACCGCAAGTGCTCCTGGAGCAGTTCCTGGTCCCacaactaatttaaatataggAATGGATTATTGGGGCACGCCAACTTCATCCACCATTCCTGCACTGCATGGAAAGGTTCCTTCTACTGCAGTTGCTGGAGGGATGATTACTTCTGGGTCACAAGATGGTGTTCAGTCACGACTTTGGCAACAGGACGAAAGAGAGCTTAAAAGACAAAGGCGGAAGCAGTCTAATAGGGAATCTGCACGCAGATCCAGGTTGCGCAAGCAGGCTGAATGTGATGAACTAGCTCAGCGTGCTGAAGctttgaaagaagaaaatgcCACTCTCCGATCAGAAGTGAGCCGGATCAGAAGTGAGCATGAGCAGCTACTTTCTGAGAATGCAGCCCTCAAGGAGAGACTTGGGGAGATACCTGGTGTTACAACGCCTGGGAACGAGGATCTTAGGTCAGGCCAGAATGATCAGCATGTGAGTAATGACACTCAACAGAGTAGTCAGACAGAGGCTGTGCAGGGTGTTCATTAG 1248 0.4551 MGSSDMDKTPKEKESKTPPATSQEQSPTTGMATINPDWSNFQTYSPIAPHGFLASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPHGGIYAHPSIPPGSYPFSPFAMASPNGIADASGNTPGSIEVGGKPPEVKEKLPVKRSKGSAVGGLNMWITGKNNELGKTPGESANGIHSKSGESASEGTSEGSDENSQNDSQLKSGERQDSFEDEPSQNGSSVHAPQNGVHNRPQTVNQTMSIIPISTASAPGAVPGPTTNLNIGMDYWGTPTSSTIPALHGKVPSTAVAGGMITSGSQDGVQSRLWQQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENATLRSEVSRIRSEHEQLLSENAALKERLGEIPGVTTPGNEDLRSGQNDQHVSNDTQQSSQTEAVQGVH 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0928 415 MobiDBLite consensus disorder prediction 368 415 - -
Ssu5g0928 415 MobiDBLite consensus disorder prediction 286 300 - -
Ssu5g0928 415 MobiDBLite consensus disorder prediction 283 332 - -
Ssu5g0928 415 SMART brlzneu 306 370 IPR004827 GO:0003700|GO:0006355
Ssu5g0928 415 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 415 IPR044827 GO:0003700|GO:0006355|GO:0043565
Ssu5g0928 415 MobiDBLite consensus disorder prediction 210 229 - -
Ssu5g0928 415 MobiDBLite consensus disorder prediction 19 39 - -
Ssu5g0928 415 Pfam bZIP transcription factor 306 368 IPR004827 GO:0003700|GO:0006355
Ssu5g0928 415 SUPERFAMILY Leucine zipper domain 309 365 IPR046347 GO:0003700|GO:0006355
Ssu5g0928 415 MobiDBLite consensus disorder prediction 117 144 - -
Ssu5g0928 415 MobiDBLite consensus disorder prediction 386 415 - -
Ssu5g0928 415 Gene3D - 309 360 - -
Ssu5g0928 415 MobiDBLite consensus disorder prediction 1 18 - -
Ssu5g0928 415 Coils Coil 326 374 - -
Ssu5g0928 415 CDD bZIP_plant_GBF1 311 361 IPR045314 GO:0003700|GO:0006355
Ssu5g0928 415 MobiDBLite consensus disorder prediction 157 229 - -
Ssu5g0928 415 MobiDBLite consensus disorder prediction 301 315 - -
Ssu5g0928 415 Pfam G-box binding protein MFMR 1 96 IPR012900 -
Ssu5g0928 415 Pfam Disordered region downstream of MFMR 135 273 - -
Ssu5g0928 415 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 313 328 IPR004827 GO:0003700|GO:0006355
Ssu5g0928 415 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 308 371 IPR004827 GO:0003700|GO:0006355
Ssu5g0928 415 MobiDBLite consensus disorder prediction 157 200 - -
Ssu5g0928 415 MobiDBLite consensus disorder prediction 1 39 - -
Ssu5g0928 415 PANTHER BZIP TRANSCRIPTION FACTOR FAMILY PROTEIN 1 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0928 Ssu-Chr5 25787097 25798597 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0928 1 379 bZIP Transcription Factor Family AT2G35530 62.308 3.37e-153 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu5g0928 MFMR_assoc 3.1e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0928 K09060 - gmx:100101912 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0928 5 25787097 25798597 Ssu5g0928 5 25787097 25798597 ECH