Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0920 ATGGATCCTGGTCGCTATGCTCTGCATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGATACGGCGCCGTCCATGAGCCGAACTTCCGGGTTGGTGGTTCCTATGATGAAAGAAGGTTTATAGATGAAAGATATCCAAGGGATGCTGTTTACCAGAGAAATAATTTCCACCGTGACATTTTGGATAGGGATGCCTATCTACCGCCAGGACCTCCTGTTGGCCATTGGAGTCAATCCAAACGGAGAGGTTATGATGAAGATTATCCACTTGACAGGGAATCTAGACGATATGATAAACCTGCCAGGTTTGTAGGACATGACCGTGATGATTATGCATATGATGATTATGACTACAAGTCCCGGGCTTCCTCTCATCATCGTAGGGAGGATAGCCATGAGAGGGATTATGATCATGGTCGGCATAGTTATGATTCTGATTATGAAAGAGGTAGTAGGAGGGATGGTAATTGGAGGCGACGTGAATCACGTGATCAGGAACGAGATAAGAGGGATCATAGTCGGGAAAGAGATCTGAGTCCACAAAGAAGGCATGAGCGTTCTCTCCAGTCCCATTCCCATTCCCATTCTCATTCCCGATCTCAATCCCGTGGATATGATGACCATCCAAGATCTAGGTCCCCTCGAGGTCGAAGCCATGGTCGAAGTTATAGGGAAGATAGCTATACTGACAGTCGATATGATAAAAGTGAAAGACGTAGGGATCGTGATGATAAACGTCAGCGGGAGACTTATTCTGTGGCCCCATCTGCAACTGTTGTTGTGAAAGGTCTTTCACAGAAGACAACTGAAGAAGATCTATACCAAATCCTTgcGGAATGGGGTCCCCTCCGTCATGTTCGCGTTATAAAGGAGAGAAATTCTGGCATCTCTCGTGGATTTGCATTTATTGATTTTCCTTCTGTGGGAGCAGCACAAGGAATGATGGACAAACTGGGAGATGATGGTCTTGTTGTGGATGGCAGAAAACTTTTCTTTGAatatagTAGTAAGCCAACTGGAGGTCCTGGTCCAGATGGAGCTATGAAATCAGGTCATAATTATAAGAGCATTACAGTTCCATCTGATTGGATGTGCACTATATGTGGCTACATAAATTTTGCACGCCGGACTTCCTGCTATCAGTGTAATGAGCCACGAACTGATGATGCTCCTGCAGCagatatttcattatcaaattcagCAGCTATAGGAAAGAAAGGTTTGGAGGCAGGTCCAACTCATGTTTTGGTTGTCCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCTAAGCATGCTGCAATCAAGGATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCAAGGGGATTTGCGTTTGTACACTTTTATTCGGTGGAGGATGCTACCAAAGCTCTTGAGGCAACAAATGGAACTATGCTTGAAAAGAATGGGCAGATTCTAAGAGTGGCGTATGCAAAAAGTATCCTGGGCCCTGGATCAGGAACATCAGGAACTTCCCAATCAAGCAGTCTTGCAGCTGCTGCTATTGAGGCTGCAACATTTGCCCAGCAGTATGATTCTGTGGGATGGGCTCCAAAAGAATACAATCCAGATGACAAACAATCTACTGGTCGAGAGCAAACTGGCACAGAAGTTGGTGCTCCACAATCAGGCTTTGTTTGGGATGAAGCATCTGGTTATTACTATGATGCTGCTTCTGGGTTTTACTATGATGGAAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACCACCAAACCCAGCAGTACATACCTTGCACTGATCAAAATCAGAATAAAGCATCTAATGCGTCTGAACCTAAGGCATCTAATGGTTCCGGAAGTAAAAAGGTCATTTCTGCACCAGCTACTACTGTTACATCAGTTGAGAAGCCAGCTTCATTGGCAGATGCTGTCCAGGCTGCTGCAACTGCCGCTTTAGCtgcagagaagaaagaaaaagaaaaatcaaaggaaATAAAACTTGCCTCAAAAAGCAGTATTCTggcaaacaagaaaaaaatgaacaatgTGTTGACAATGTGGAAGCAGAGAAGCCATGAGGGGCAGGCTACTCGAGTGGCTTTGGAAGACAATCAAGCTTCTGTTTCAGCTGATGATAGGTCATATTCTTCTGGACATTCTGCAaagaataagttaaaaaatgagaCTATGATAAGGGAAAGTAATGCCTCTAATCTAGGAATTCACACAACTTCCGCCCAGGTTGCTGCTATTGATTCTCAGGCACAGCCACGGCCTGTTAGTAATAGCCTTGGAGGCACTGTGATGGGGGTTATAAGGGGCTCAGGAAGAGGGGTTGTTAAATCAGATACTTACTCAGGTTCTCCATCTGTTGCATCATCTATGCCAAGTTCATCTTCAGCAAATGTTGATGCACAGACAGTTGCTACTCCCTTTAGAACAGATTTATCTGCCCTGGGTTCATATACATCATCTGCGACTGTTGGAAGTGGCCGAAGAAGATTTTCAGAAATGCCTCATTTTGCTTCAACTCACAAGGAACAACCTCAAACAACTTACAGGGATCGTGCAGCTGAGAGGAGGAGTTTGTATGGCTCATCATCTTCAGTTGGAAATGATTTGGCTGACCTTGAAATTGGGGATTCAAATCGAGATTTTGCATCAAGGAAGGGTGATCCAATGCCATTCCCTCCCGGGGTTGGTGGAGGACGCATAGTTGGAGATGTCAACCTTGATACTTTTGAGGTGATTACGGCAGACAAAGCAATTGATGAAAACAATGTTGGTAATCGGATGCTTCGGAACATGGGATGGCAGGAAGGATTGGGACTAGGGAAGGATGGAAGTGGAATGATAGAGCCTGTCCTGACCCAAGCCACGGAAAATAGAGCAGGACTTGGGAGTCAACAGAAGAAGTTGGATCCTAGCCTTGAGGCGCAGGCAGGGGACAGTTACAAGATGCTTATTCATAAAAAAGCACTTGCCAGGTTTCGGGAGATGTCAGAGAGTTGA 3033 0.4369 MDPGRYALHQGWDNNSALEGYGAVHEPNFRVGGSYDERRFIDERYPRDAVYQRNNFHRDILDRDAYLPPGPPVGHWSQSKRRGYDEDYPLDRESRRYDKPARFVGHDRDDYAYDDYDYKSRASSHHRREDSHERDYDHGRHSYDSDYERGSRRDGNWRRRESRDQERDKRDHSRERDLSPQRRHERSLQSHSHSHSHSRSQSRGYDDHPRSRSPRGRSHGRSYREDSYTDSRYDKSERRRDRDDKRQRETYSVAPSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAAQGMMDKLGDDGLVVDGRKLFFEYSSKPTGGPGPDGAMKSGHNYKSITVPSDWMCTICGYINFARRTSCYQCNEPRTDDAPAADISLSNSAAIGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAAIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTMLEKNGQILRVAYAKSILGPGSGTSGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKQSTGREQTGTEVGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDHQTQQYIPCTDQNQNKASNASEPKASNGSGSKKVISAPATTVTSVEKPASLADAVQAAATAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQASVSADDRSYSSGHSAKNKLKNETMIRESNASNLGIHTTSAQVAAIDSQAQPRPVSNSLGGTVMGVIRGSGRGVVKSDTYSGSPSVASSMPSSSSANVDAQTVATPFRTDLSALGSYTSSATVGSGRRRFSEMPHFASTHKEQPQTTYRDRAAERRSLYGSSSSVGNDLADLEIGDSNRDFASRKGDPMPFPPGVGGGRIVGDVNLDTFEVITADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMIEPVLTQATENRAGLGSQQKKLDPSLEAQAGDSYKMLIHKKALARFREMSES 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0920 1010 Gene3D - 185 340 IPR012677 -
Ssu5g0920 1010 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 414 494 IPR000504 GO:0003723
Ssu5g0920 1010 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 257 337 IPR000504 GO:0003723
Ssu5g0920 1010 SUPERFAMILY Ran binding protein zinc finger-like 354 389 IPR036443 -
Ssu5g0920 1010 MobiDBLite consensus disorder prediction 787 808 - -
Ssu5g0920 1010 SMART zf_4 361 385 IPR001876 -
Ssu5g0920 1010 MobiDBLite consensus disorder prediction 120 252 - -
Ssu5g0920 1010 PANTHER FI21118P1 182 1007 - -
Ssu5g0920 1010 PANTHER FI21118P1 38 176 - -
Ssu5g0920 1010 MobiDBLite consensus disorder prediction 62 93 - -
Ssu5g0920 1010 CDD OCRE_SUA_like 553 605 IPR035623 -
Ssu5g0920 1010 Pfam OCRE domain 556 604 IPR041591 -
Ssu5g0920 1010 PANTHER RNA-BINDING PROTEIN 182 1007 - -
Ssu5g0920 1010 PANTHER RNA-BINDING PROTEIN 38 176 - -
Ssu5g0920 1010 MobiDBLite consensus disorder prediction 79 93 - -
Ssu5g0920 1010 MobiDBLite consensus disorder prediction 120 187 - -
Ssu5g0920 1010 ProSitePatterns Zinc finger RanBP2-type signature. 363 382 IPR001876 -
Ssu5g0920 1010 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 259 318 IPR000504 GO:0003723
Ssu5g0920 1010 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 416 482 IPR000504 GO:0003723
Ssu5g0920 1010 CDD RRM1_RRM2_RBM5_like 255 335 - -
Ssu5g0920 1010 ProSiteProfiles G-patch domain profile. 932 978 IPR000467 GO:0003676
Ssu5g0920 1010 SUPERFAMILY RNA-binding domain, RBD 412 501 IPR035979 GO:0003676
Ssu5g0920 1010 SUPERFAMILY RNA-binding domain, RBD 248 342 IPR035979 GO:0003676
Ssu5g0920 1010 MobiDBLite consensus disorder prediction 199 250 - -
Ssu5g0920 1010 Gene3D - 356 389 - -
Ssu5g0920 1010 Pfam G-patch domain 933 974 IPR000467 GO:0003676
Ssu5g0920 1010 SMART G-patch_5 930 976 IPR000467 GO:0003676
Ssu5g0920 1010 ProSiteProfiles Zinc finger RanBP2 type profile. 359 388 IPR001876 -
Ssu5g0920 1010 SMART rrm1_1 415 490 IPR000504 GO:0003723
Ssu5g0920 1010 SMART rrm1_1 258 333 IPR000504 GO:0003723
Ssu5g0920 1010 Gene3D - 401 555 IPR012677 -
Ssu5g0920 1010 MobiDBLite consensus disorder prediction 532 556 - -
Ssu5g0920 1010 CDD RRM1_RRM2_RBM5_like 412 492 - -
Ssu5g0920 1010 MobiDBLite consensus disorder prediction 788 808 - -
Ssu5g0920 1010 MobiDBLite consensus disorder prediction 609 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0920 Ssu-Chr5 25521326 25528823 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0920 256 478 Eukaryotic Initiation Factors Gene Family AT2G36660 24.800 4.26e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0920 K13094 - gmx:100777686 1709.89