Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0911 ATGTTTACGTGCATAGCGTGTACGAAGCAAACGACGGATGAGAGGGACGAAGAAGGAGGAACACGAGAGAGTGGCACGCCGAGTACAAAAGAAGCCGTCAAAAGCCTGACCACGCAGATAAAGGATATGGCACTGAAGTTTTCTGGTGCTTACAAGCAATGCAAACCCTGCACAGGGTCCAGTAGCTACAAGAAAGGACATAGACCATATCCAGACTTTGATACCATCTCAGAAGGGGTTCCATACCCTTACATTGGAGGTGCAAGCTCAAGTTCAACCCCTGCATGGGACTTCACAACCTCTCACTACCCTGGCGGTAGATCTGACCCAAGATTTGCTGGGGGATTTGGTGGTGACCGCACCCCTAGAGGACGTGACTCATCATCAGTCTGTGATGTAGTCTTAGAGGACGAGGATGAGCCTAAGGAGTGGATGGCACAGGTGGAGCCAGGGGTTCACATTACCTTTGTGTCTCTTCCCAATGGAGGAAATGATCTTAAAAGAATTCGCTTCAGGAGCAAAGACTGA 528 0.4962 MFTCIACTKQTTDERDEEGGTRESGTPSTKEAVKSLTTQIKDMALKFSGAYKQCKPCTGSSSYKKGHRPYPDFDTISEGVPYPYIGGASSSSTPAWDFTTSHYPGGRSDPRFAGGFGGDRTPRGRDSSSVCDVVLEDEDEPKEWMAQVEPGVHITFVSLPNGGNDLKRIRFRSKD 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0911 175 MobiDBLite consensus disorder prediction 9 32 - -
Ssu5g0911 175 Pfam Transcription factor BRX N-terminal domain 24 57 IPR027988 -
Ssu5g0911 175 PANTHER BNAA05G16600D PROTEIN 1 172 - -
Ssu5g0911 175 Pfam Transcription factor regulating root and shoot growth via Pin3 142 173 IPR013591 -
Ssu5g0911 175 MobiDBLite consensus disorder prediction 10 24 - -
Ssu5g0911 175 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 172 IPR044532 -
Ssu5g0911 175 ProSiteProfiles BRX domain profile. 142 175 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0911 Ssu-Chr5 25136896 25140595 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0911 1 171 Major Intrinsic Protein MIP AT1G31880 68.391 5.20e-74 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0911 - - ccaj:109789470 352.443