Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0910 ATGTTTAATAAATGGCAAGCTCAAAGATGGTGGGGTGAGAATTACGACAGAATCATGGAACTTTATAACGTCCAGAGATTTAATCGACAAGCTCTTAACACTCCTCCAAGGTCTGAGGATGAGCAAAGAGATTCTTCTTTCACAAGATTGACATCTGCACAAGAAAGCCCCATGCCCTCAAACAAGGATTGGACACCGAGGAGTCACTATAAACCCTCTGGGAGCAGAGGATATTACCCCTCTGAACCGTTGGATCACGGTGGAGGTGGTGGCCACTTCCATGCAGGGTCGTCTATGGAACCAGCAAGGGATACTACTGCTTCTAGGGATGAGCCTTCTATCAGCAATGCCAGTGAAATGGAGACAGAATGGGTAGAACAAGACGAGTCTGGAGTTTACATTACAATCAGGCAGTTAGCTGATGGGACAAGGGAGCTTCGACGTGTCAGATTCAGCCGGGAAAGATTTGGGGAGGTGAATGCAAAAACTTGGTGGGAAGAGAACAGAGAGAGAATACAAGCTCAATACCTTTGA 534 0.4644 MFNKWQAQRWWGENYDRIMELYNVQRFNRQALNTPPRSEDEQRDSSFTRLTSAQESPMPSNKDWTPRSHYKPSGSRGYYPSEPLDHGGGGGHFHAGSSMEPARDTTASRDEPSISNASEMETEWVEQDESGVYITIRQLADGTRELRRVRFSRERFGEVNAKTWWEENRERIQAQYL 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0910 177 Pfam Transcription factor regulating root and shoot growth via Pin3 1 22 IPR013591 -
Ssu5g0910 177 Pfam Transcription factor regulating root and shoot growth via Pin3 121 176 IPR013591 -
Ssu5g0910 177 ProSiteProfiles BRX domain profile. 122 177 IPR013591 -
Ssu5g0910 177 MobiDBLite consensus disorder prediction 32 123 - -
Ssu5g0910 177 MobiDBLite consensus disorder prediction 47 68 - -
Ssu5g0910 177 ProSiteProfiles BRX domain profile. 1 23 IPR013591 -
Ssu5g0910 177 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 177 - -
Ssu5g0910 177 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 177 IPR044532 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0910 Ssu-Chr5 25135567 25136863 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0910 1 177 Major Intrinsic Protein MIP AT1G31880 66.120 2.26e-79 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0910 - - ccaj:109789470 348.977