Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0909 ATGGAGAGGTACAAGTTAATTAAGGAAGTTGGTGATGGAACATTTGGGAGTGTTTGGAGGGCCATTAATAAGCAAAGTGGTGAAGTTGTAAAAAACTTGCTGGTCACCAGGGATGTCATCAAGATTGCTGATTTTGGCCTAGCCCGAGAGATCAGTTCACAACCACCCTATACTGAGTATGTCTCCACACGGTGGTATCGTGCTCCTGAAGTCCTGCTTCAGTCCCATCTATATAGCTCTAAAGTTGATATGTGGGCAATGGGTGCTATTATGGCTGAGTTGTTCACTCTCCGTCCTCTATTCCCCGGTACCAGTGAAGCAGATGAGATCTACAAAATATGCAGTGTGATAGGTAGTCCAACCACTGAATCTTGGGCAGATGGACTCAAACTTGCCAGGGATATCAACTATCAGTTTCCACAGCTTGCTGGTGTACATCTTTCTGCATTGATCCCATCCAGAAGTGATGACGCAATCAGCCTTGTCACATCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTCCAACATCCTTTCTTCCAGagTTGCTTTTACATCCCTCCGTCCCTTCGCACCAGAGCTGTAACCAGAATTCCTCCATCTgCTGGGACCAGGGGATCACTGGATCGGCAGGGGCTCAAGAGATACTCTGGTGCTTTGCCTAATACAAAAATCACCAACAATTTTTCTTCACCGAAATTACAAGCTTCTTTAGCTTCAGGTGTGCAACGGAAGCTGAATATGGCAAATGAGGATGGAATTATGAACAGGAAGTCATTGAAGACTACGCAACAATCAAAATATCGATTACCAGGAAAAGACAGCCCAACTTCTATAAACAAGGGGAGGACTGCACGTGGGGTTTCAGAAACAGCTGAGAAGTTGGCGAACGTGTCCATTGGTACTCGAAGACAGTCCTTGGGACAAACCCGTCCACCTCCAATGAAGGCTGGAGTCAATTGGATTTCTGAATCTGGAAACTTCATGCTCAGGTCCGGACAACAAATTCCAACTGAAAGAACTTTCACAAGAAAAGTTGCCGGGTGA 1062 0.4586 MERYKLIKEVGDGTFGSVWRAINKQSGEVVKNLLVTRDVIKIADFGLAREISSQPPYTEYVSTRWYRAPEVLLQSHLYSSKVDMWAMGAIMAELFTLRPLFPGTSEADEIYKICSVIGSPTTESWADGLKLARDINYQFPQLAGVHLSALIPSRSDDAISLVTSLCSWDPCKRPTAAEALQHPFFQSCFYIPPSLRTRAVTRIPPSAGTRGSLDRQGLKRYSGALPNTKITNNFSSPKLQASLASGVQRKLNMANEDGIMNRKSLKTTQQSKYRLPGKDSPTSINKGRTARGVSETAEKLANVSIGTRRQSLGQTRPPPMKAGVNWISESGNFMLRSGQQIPTERTFTRKVAG 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0909 353 PANTHER - 31 329 - -
Ssu5g0909 353 SUPERFAMILY Protein kinase-like (PK-like) 32 189 IPR011009 -
Ssu5g0909 353 ProSiteProfiles Protein kinase domain profile. 1 185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0909 353 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 31 329 - -
Ssu5g0909 353 SMART serkin_6 4 185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0909 353 Gene3D Transferase(Phosphotransferase) domain 1 30 191 - -
Ssu5g0909 353 Pfam Protein kinase domain 31 185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0909 353 MobiDBLite consensus disorder prediction 265 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0909 Ssu-Chr5 25097673 25102427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0909 31 188 Core Cell Cycle Gene Families AT3G48750 39.752 3.04e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Ssu5g0909 Pkinase 4.1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0909 K08829 - gmx:100784474 616.69