Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0907 ATGGAGAAAACAAGGCCCTCAGATCAAGTTGTTCTCTTCCTCGACCAGCATAACCCTAAACCATCCTCTATGGACGCCGAAAATCTTCAGGAGAAACCCAAACAACCCTTAAAAGTCAAAACTCTAAACCGTCTCAGCTTCTCAAAACCCAAATCCCGAATCCTAGAATACAACTATGCCCCCCGCAACAAACTTGCAACCTCCGAAGAAGGTGACATTATTCAGCCCACCTATAAGCTCTCTTCCAACGACGATGACGACGACGATTGGGAATGGGACAAAGAAGAGACGGAGGAGGATGGCTCAGAGCATGACCCAAAGTTGCACCAAAAGAGGAAGTTCAAAGTCAAGTGGAGGCTCTTGGTGGAGTGGATTTTGTTCCTCAACATCTTGACATGCTTGGTGTGTTCTTTGACCATATCTTCCATAACGAACATGCACGTGTGGGGATTGGAGATTTGGAAGTGGTGTTTGACGGTAATGGTCACATTCAGTGGCCGTTTGGTTTCAGGGTGGCTGGTTGGTGTCACGGTTTTCATCATCGAGCGAAACTTCATGCTAAGGGAGAAGGTCTTGTACTTCATCTACGGACTCAGAAAGAGCATAAGAAACTGTCTGTGGTTAGGCCTCGTGCTACTCTCCTACTGGAGCGTGGTGTTCGATGATGTCCAAAAGAAGAACCACAAGTTCCTCAACAAGGTGTTCCAGGCGCTGGTGGCGGTTCTGGTGGGCGCAACCATTTGGCTCGTGAAGATCGTGCTCGTGAAGATGCTAGCATCATCATTTCACGTGACAACCTACTTTGACAGAATGAAAGAGAGCGTTTTCCATCACTACATTCTGGACACCTTGTCGGGTCCACCCATGGAAGACGCTGAAGAGATATTGCAGCAGCAACACCTCACCGGATCCAAGTCCATGCCCGCGAGGTGGAAGATGAAGGATGCGAAGAACTTGTACAAGTCCAAGAAATTTGGGTCGAGGAAGATTGACATGGAGAAGCTGAGAGAGCTTAGCATGGAGAGCACTGCGTCTGCGTGGAGCGTGAGGAGGCTCGTTAACTATGTCAGGTCTTCGGGTTTGTCTACCATTTCCAGGACTGTGGATGATTTTGGCAACGCTGAGTCTGAGATCAGCAGTGAGTGGGAAGCTAGAAACTGTGCACAGAGGATTTTCAAGAACGTTGCCAAACCTGGTGCCAAGTACATTGAAGAGGATGATCTCATGAGATTTTTGAAGAGGGTTGAGACACATACCATATTTCCACTCTTTGAAGGAGCTCTTGAAACGGGCAAGATCAGCAGGTCTTCATTTAGAAATTGGGTGATTCGAGCTTATTATGAACGAAAAGCTCTAGCACAATCACTCAATGATACAAAAACAGCAGTGCAGCAGCTTCACAAAATAGCAAGCGCAGTTGTTAGTGTGATAATAATCATTGTGACACTTTTGGTGATGGGGGTGGCTACGCTCAAGATAATATTATTCTGTATTACACAGACAGTTTTGATAGGCGTTGCCTTCCAAGGTACTTGCAAGACTCTATTGGAGGCCATCATCTTTGTCTTCGTCATGCACCCTTTTGATATTGGAGACCGCTGCGTCATTGATGGAGTTCAGATGATTGTGGAAGAGATGAATATCTTGACAACAGTTTTTCTTCGATATGACAATGAGAAAATATACTACCCTAATGCAGTTTTGCTCTCTAAGCCAATAAGCAATTTCTATAGGAGTCCAGAGATGTGGGATTCAATTGATTTCACCGTTGATGTTTCAACTCCTATGGAGACCATCCTTGCACTCAAGAAATCAATACAAATGTACATTGAGAGCAAGCCAAAGTATTGGAATCCAAAACACAGTTTGATAGCAAAAGGAATTGATAATGTGGACAAGCTAAAGTTGTGCTTATCTGTGCAACATACCATCAACCATCAGAACTACGGTGAGCGAAACATTAGGATAACGGAGCTTCTCTTGGAAATGAAGAAGATCTTTGAGATCCATGGTGTCAAGTACCATCTTCTTCCTCAGGAGATCCAAATTACCCATATGAATATTGAAAATGGGAAAGTTCTGTTTCAACCATGA 2094 0.447 MEKTRPSDQVVLFLDQHNPKPSSMDAENLQEKPKQPLKVKTLNRLSFSKPKSRILEYNYAPRNKLATSEEGDIIQPTYKLSSNDDDDDDWEWDKEETEEDGSEHDPKLHQKRKFKVKWRLLVEWILFLNILTCLVCSLTISSITNMHVWGLEIWKWCLTVMVTFSGRLVSGWLVGVTVFIIERNFMLREKVLYFIYGLRKSIRNCLWLGLVLLSYWSVVFDDVQKKNHKFLNKVFQALVAVLVGATIWLVKIVLVKMLASSFHVTTYFDRMKESVFHHYILDTLSGPPMEDAEEILQQQHLTGSKSMPARWKMKDAKNLYKSKKFGSRKIDMEKLRELSMESTASAWSVRRLVNYVRSSGLSTISRTVDDFGNAESEISSEWEARNCAQRIFKNVAKPGAKYIEEDDLMRFLKRVETHTIFPLFEGALETGKISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKIASAVVSVIIIIVTLLVMGVATLKIILFCITQTVLIGVAFQGTCKTLLEAIIFVFVMHPFDIGDRCVIDGVQMIVEEMNILTTVFLRYDNEKIYYPNAVLLSKPISNFYRSPEMWDSIDFTVDVSTPMETILALKKSIQMYIESKPKYWNPKHSLIAKGIDNVDKLKLCLSVQHTINHQNYGERNIRITELLLEMKKIFEIHGVKYHLLPQEIQITHMNIENGKVLFQP 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0907 697 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 4 695 - -
Ssu5g0907 697 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 4 695 IPR016688 -
Ssu5g0907 697 MobiDBLite consensus disorder prediction 84 99 - -
Ssu5g0907 697 MobiDBLite consensus disorder prediction 1 36 - -
Ssu5g0907 697 PIRSF Memb_At2g17000 7 695 IPR016688 -
Ssu5g0907 697 Pfam Mechanosensitive ion channel 468 673 IPR006685 GO:0016020|GO:0055085
Ssu5g0907 697 SUPERFAMILY Sm-like ribonucleoproteins 518 576 IPR010920 -
Ssu5g0907 697 Gene3D - 527 576 IPR023408 -
Ssu5g0907 697 MobiDBLite consensus disorder prediction 76 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0907 Ssu-Chr5 25063906 25077850 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0907 6 687 Mechanosensitive Ion Channel Family AT5G12080 42.898 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0907 K22048 - gmx:100813521 1216.45