Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0901 ATGGAGTCCAGTGAGAATGAGCGCGTGACGGTTCGCGAGTTCTGCGCGAATGGAAGTTGCATGAAAGCGACAGAAGTTGAGGCCAAGCTTGATGAAGGAAATATTCAAGAAGCCGAAGCCGCATTGCGTGAAGGGTTGTCAATAAATTTTGAGGAAGCAAGGGCTCTTCTTGGAAAGTTAGAGTATCAAAGAGGTAATGTCGAAGGTGCTCTTCGTGTGTTTGATGGGATTGATCTTCAAGCAGCCATACAGAGACTGCAAACTTCCCTTTCTGAAAAACCACCTGTTAAGAAATGTCCCACTCGCACTGAATCACCTTCCTCAGTCTCTCAGCACGCTGCTTGTTTGGTGCTCGAAGCCATCTACTTGAAAGCCAAGTCTCTACAAAAACTGGACAAATTTACTGAAGCTGCTAATGAATGCAAGCGTGTTCTTGATGCTGTTGAGAAGATATTTTGTCAGGGTATACCTGATACACAAGTGGATAATAGATTGCAGGAGATAGTCAGCCATGCTGTAGAGCTCCTTCCAGAGCTTTGGAAACAGGCCGGTTGCTATAATGAGGCATTGTCTGCTTATAGGAATGCCCTCCTTAGTCAATGGAACCTTGATGATGATTTCTGTGCAAGAATTCAGAAGGCATTTGCTGTGTTTTTGCTGTACAGCGGGGTGGAGGCAAGTCCACCGAGTTTAGCCGTTCAGATTGATGGGTCTTAtgtacctaaaaataatctggAAGAGGCAATTCTTCTTCTAATGATTCTTTTGAGAAAGTTTAGCCTTGGTAAGATAAAGTGGGATCCTTCAATTATGGAACACCTGACGTTTGCACTTTCAGCATGTGGTCAAACTTCTATTTTAGCAAAGCAACTTGAAGAGTTGATGCCTGGTGTATATCACCGTATTGACCGTTGGAATTTTTTAGCTCTATGTAATAGTGGAGATGGACAAAATAGAAGTGCTTTGAATCTGCTAAGGATGTCTTTGCATAAACATGAACGACCAGATGACCTCGTATCATTATTATTGGCTGCCAAGATTTGCAGTGAGGATCCTCATCTTGCTGCTGAGGGAGCAGGATATGCACAGAGAGCAATCAATAATGCTCAGGGCTTAGATGAGCATTTGAAAAGTGTGGGTCTTCGGATGTTGGGACTTTGCCTGGGAAAGCAAGCTAAGGTTTCTTCCTCCGACTTTGAGAGGTCTACGCTTCAATCCAAAGCTCTGCAATCATTGGAGGAGGCGCACCGAAATTTAACTGCTGCCCTATGCTATGCCAAAAAATTCTTTGACAAAACTGGTGGTTCTAAATTGAAAGGTTGGAGATTGCTTGCTCTAGTTTTGTCTGCACAAAAAAGATTTTCCGAGGCTGAAGTGGTGGCTGATGCTGCTTTAGATGAGACTGCAAAATGGGAGCAGGGGCCGCTGCTCAGGCTGAAAGCCAAGCTGAAGATCTCCCAATTACGACCCATGGATGCTATTGAAATTTACCGGTACCTTCTTGCATTGGTTCAAGCCCAGAGGAAATCATTTGGGCCTCTCAAACTTAGTTCACAGGTTGAAGATTATACAATAAATGAATTTGAAGTTTGGCATGGTCTGGCAAATTTGTATGCTAGTCTTTCTCATTGGAAGGACGGTGAAATCTGTTTGCAAAAGGCCAGAGAATTAAAGGAACACTCAGCAGAAACAATACACACTGAAGGCAAGAATGGAACCTTTATGCTGTTAAGATTTTCTACTTTAGCGTGTTCAACTTGTGTTTTCCCTCCTGTTTTAATCAAATTGAGATATCAAGGGGGAAGCAGGACCAGGGATTCAATCCCTTGCCTGCATTGGGATTTGGGAGTGTACTTATGGATGTGA 1866 0.4303 MESSENERVTVREFCANGSCMKATEVEAKLDEGNIQEAEAALREGLSINFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQTSLSEKPPVKKCPTRTESPSSVSQHAACLVLEAIYLKAKSLQKLDKFTEAANECKRVLDAVEKIFCQGIPDTQVDNRLQEIVSHAVELLPELWKQAGCYNEALSAYRNALLSQWNLDDDFCARIQKAFAVFLLYSGVEASPPSLAVQIDGSYVPKNNLEEAILLLMILLRKFSLGKIKWDPSIMEHLTFALSACGQTSILAKQLEELMPGVYHRIDRWNFLALCNSGDGQNRSALNLLRMSLHKHERPDDLVSLLLAAKICSEDPHLAAEGAGYAQRAINNAQGLDEHLKSVGLRMLGLCLGKQAKVSSSDFERSTLQSKALQSLEEAHRNLTAALCYAKKFFDKTGGSKLKGWRLLALVLSAQKRFSEAEVVADAALDETAKWEQGPLLRLKAKLKISQLRPMDAIEIYRYLLALVQAQRKSFGPLKLSSQVEDYTINEFEVWHGLANLYASLSHWKDGEICLQKARELKEHSAETIHTEGKNGTFMLLRFSTLACSTCVFPPVLIKLRYQGGSRTRDSIPCLHWDLGVYLWM 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0901 621 SUPERFAMILY TPR-like 440 564 IPR011990 GO:0005515
Ssu5g0901 621 Coils Coil 21 41 - -
Ssu5g0901 621 SMART tpr_5 528 561 IPR019734 GO:0005515
Ssu5g0901 621 SMART tpr_5 118 151 IPR019734 GO:0005515
Ssu5g0901 621 SMART tpr_5 302 335 IPR019734 GO:0005515
Ssu5g0901 621 SMART tpr_5 438 471 IPR019734 GO:0005515
Ssu5g0901 621 Gene3D Tetratricopeptide repeat domain 360 574 IPR011990 GO:0005515
Ssu5g0901 621 PANTHER PROTEIN NPG1 1 569 IPR043376 -
Ssu5g0901 621 PANTHER CALMODULIN-BINDING PROTEIN 1 569 - -
Ssu5g0901 621 SUPERFAMILY TPR-like 28 554 IPR011990 GO:0005515
Ssu5g0901 621 Gene3D Tetratricopeptide repeat domain 25 205 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0901 Ssu-Chr5 24800062 24805401 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0901 3 570 Calmodulin-binding Proteins AT2G43040 73.684 0.0 827
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0901 K21843 - gmx:100811897 996.497