Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0895 ATGGATAATGGTGAGACACCGTTCGGTGGCAAAGCTGGTGCCTTTCTAATTGCCATGATTTCAGCCAGCTTTGTGGTCACAATTTACCTTCTCATAATCGTTTGTTGCAACCAGCGTCATGTCACGAACCAAAATTCAGAAGAACAACCACTGGCACAAGCACGGAGCATGGGAGAGAATGCTTTCTTGCCGCACCTGATTCCAGCCCACAAgtatgaaaagaagaagaaaaataacgATGACGTGGCAGAGGGTGATAAAGATGGCACGTGTGTTGTGTGCTTAGAAGACTTTGAAGAGGGTGAAGAGTTGAGGACGTTGCCGGAGTGCAAGCACTCTTTCCACGTGCCATGCATAGATACGTGGCTCTCTTCCCATTCCAGTTGTCCCGTTTGCCGGGCTCATGCCACGCCTTCACCGGTGGTGCTCCACTGCTCGCCGGAGTTCGGTTCCAATGCCTTGAATGCACATCACAGCATAGATATCATGCAGATAGCTCTCGTTCAAAATGGGTAG 516 0.4787 MDNGETPFGGKAGAFLIAMISASFVVTIYLLIIVCCNQRHVTNQNSEEQPLAQARSMGENAFLPHLIPAHKYEKKKKNNDDVAEGDKDGTCVVCLEDFEEGEELRTLPECKHSFHVPCIDTWLSSHSSCPVCRAHATPSPVVLHCSPEFGSNALNAHHSIDIMQIALVQNG 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0895 171 SMART ring_2 91 132 IPR001841 -
Ssu5g0895 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 139 IPR013083 -
Ssu5g0895 171 ProSiteProfiles Zinc finger RING-type profile. 91 133 IPR001841 -
Ssu5g0895 171 CDD RING-H2_PA-TM-RING 90 133 - -
Ssu5g0895 171 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 166 IPR044675 -
Ssu5g0895 171 SUPERFAMILY RING/U-box 70 139 - -
Ssu5g0895 171 Pfam Ring finger domain 90 133 IPR001841 -
Ssu5g0895 171 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 2 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0895 Ssu-Chr5 24654379 24654894 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0895 14 137 C3H Transcription Factor Family AT5G17600 39.706 2.14e-22 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0895 - - gmx:100809606 199.134