Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu5g0895 | ATGGATAATGGTGAGACACCGTTCGGTGGCAAAGCTGGTGCCTTTCTAATTGCCATGATTTCAGCCAGCTTTGTGGTCACAATTTACCTTCTCATAATCGTTTGTTGCAACCAGCGTCATGTCACGAACCAAAATTCAGAAGAACAACCACTGGCACAAGCACGGAGCATGGGAGAGAATGCTTTCTTGCCGCACCTGATTCCAGCCCACAAgtatgaaaagaagaagaaaaataacgATGACGTGGCAGAGGGTGATAAAGATGGCACGTGTGTTGTGTGCTTAGAAGACTTTGAAGAGGGTGAAGAGTTGAGGACGTTGCCGGAGTGCAAGCACTCTTTCCACGTGCCATGCATAGATACGTGGCTCTCTTCCCATTCCAGTTGTCCCGTTTGCCGGGCTCATGCCACGCCTTCACCGGTGGTGCTCCACTGCTCGCCGGAGTTCGGTTCCAATGCCTTGAATGCACATCACAGCATAGATATCATGCAGATAGCTCTCGTTCAAAATGGGTAG | 516 | 0.4787 | MDNGETPFGGKAGAFLIAMISASFVVTIYLLIIVCCNQRHVTNQNSEEQPLAQARSMGENAFLPHLIPAHKYEKKKKNNDDVAEGDKDGTCVVCLEDFEEGEELRTLPECKHSFHVPCIDTWLSSHSSCPVCRAHATPSPVVLHCSPEFGSNALNAHHSIDIMQIALVQNG | 171 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu5g0895 | 171 | SMART | ring_2 | 91 | 132 | IPR001841 | - | |
Ssu5g0895 | 171 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 37 | 139 | IPR013083 | - | |
Ssu5g0895 | 171 | ProSiteProfiles | Zinc finger RING-type profile. | 91 | 133 | IPR001841 | - | |
Ssu5g0895 | 171 | CDD | RING-H2_PA-TM-RING | 90 | 133 | - | - | |
Ssu5g0895 | 171 | PANTHER | RING-H2 FINGER PROTEIN ATL51-RELATED | 2 | 166 | IPR044675 | - | |
Ssu5g0895 | 171 | SUPERFAMILY | RING/U-box | 70 | 139 | - | - | |
Ssu5g0895 | 171 | Pfam | Ring finger domain | 90 | 133 | IPR001841 | - | |
Ssu5g0895 | 171 | PANTHER | CHROMATIN REGULATOR PHD FAMILY-RELATED | 2 | 166 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu5g0895 | Ssu-Chr5 | 24654379 | 24654894 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu5g0895 | 14 | 137 | C3H Transcription Factor Family | AT5G17600 | 39.706 | 2.14e-22 | 90.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu5g0895 | - | - | gmx:100809606 | 199.134 |