Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu5g0893 | ATGGATAATGGTGAAACACTGTTTGGTGGCAAAGTTGGTACCATACTAATTGCCATGGGTTCAGCCAGTTTTTTGGTCACAGTATTCCATCTCGTAGTCCTTTGTCGCAACCAGCGTCATGTCACGAGCCAAAATTCAGAAGAACAAGAAGCAAGGTCCGCACCACTAGCGCAAGTGCGGAGCAGGGGAGAGAACACTCTGGTGCCGCACCTGATACCAGCCCAcaagtataaaaagaataagaaaaataacgATGACGTGACAGAGGGTGAGGAAGATGGCACGTGTGCAGTGTGCTTAGGAGACTTTGAAGAGGGTGAAGAGTTGAGGACGTTGCCGGAGTGCATGCACTCTTTCCACGTGCCATGCATAGATATGTGGCTCAATTCTCATTCCAGTTGTCCAGTTTGCCGGGCCGATGCCACGGCAGCCATGCCTTCGCCAGCGGTGCCCCACCGTTCGCCGGAGTTTGGTTCTGGTGCGTTGAATGCTCATCACAGCATAGATATCGTGCAAATAGCTCTCGTCCAAAATGGGTTGGCGCGACGGTGA | 552 | 0.5 | MDNGETLFGGKVGTILIAMGSASFLVTVFHLVVLCRNQRHVTSQNSEEQEARSAPLAQVRSRGENTLVPHLIPAHKYKKNKKNNDDVTEGEEDGTCAVCLGDFEEGEELRTLPECMHSFHVPCIDMWLNSHSSCPVCRADATAAMPSPAVPHRSPEFGSGALNAHHSIDIVQIALVQNGLARR | 183 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu5g0893 | 183 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 70 | 144 | IPR013083 | - | |
Ssu5g0893 | 183 | Pfam | Ring finger domain | 95 | 138 | IPR001841 | - | |
Ssu5g0893 | 183 | PANTHER | CHROMATIN REGULATOR PHD FAMILY-RELATED | 3 | 183 | - | - | |
Ssu5g0893 | 183 | PANTHER | RING-H2 FINGER PROTEIN ATL51-RELATED | 3 | 183 | IPR044675 | - | |
Ssu5g0893 | 183 | SUPERFAMILY | RING/U-box | 95 | 146 | - | - | |
Ssu5g0893 | 183 | SMART | ring_2 | 96 | 137 | IPR001841 | - | |
Ssu5g0893 | 183 | CDD | RING-H2_RNF111_like | 95 | 140 | - | - | |
Ssu5g0893 | 183 | MobiDBLite | consensus disorder prediction | 42 | 62 | - | - | |
Ssu5g0893 | 183 | ProSiteProfiles | Zinc finger RING-type profile. | 96 | 138 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu5g0893 | Ssu-Chr5 | 24616288 | 24616839 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu5g0893 | 16 | 144 | C3H Transcription Factor Family | AT5G17600 | 33.577 | 2.33e-20 | 85.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu5g0893 | - | - | gmx:100809606 | 197.978 |