Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0893 ATGGATAATGGTGAAACACTGTTTGGTGGCAAAGTTGGTACCATACTAATTGCCATGGGTTCAGCCAGTTTTTTGGTCACAGTATTCCATCTCGTAGTCCTTTGTCGCAACCAGCGTCATGTCACGAGCCAAAATTCAGAAGAACAAGAAGCAAGGTCCGCACCACTAGCGCAAGTGCGGAGCAGGGGAGAGAACACTCTGGTGCCGCACCTGATACCAGCCCAcaagtataaaaagaataagaaaaataacgATGACGTGACAGAGGGTGAGGAAGATGGCACGTGTGCAGTGTGCTTAGGAGACTTTGAAGAGGGTGAAGAGTTGAGGACGTTGCCGGAGTGCATGCACTCTTTCCACGTGCCATGCATAGATATGTGGCTCAATTCTCATTCCAGTTGTCCAGTTTGCCGGGCCGATGCCACGGCAGCCATGCCTTCGCCAGCGGTGCCCCACCGTTCGCCGGAGTTTGGTTCTGGTGCGTTGAATGCTCATCACAGCATAGATATCGTGCAAATAGCTCTCGTCCAAAATGGGTTGGCGCGACGGTGA 552 0.5 MDNGETLFGGKVGTILIAMGSASFLVTVFHLVVLCRNQRHVTSQNSEEQEARSAPLAQVRSRGENTLVPHLIPAHKYKKNKKNNDDVTEGEEDGTCAVCLGDFEEGEELRTLPECMHSFHVPCIDMWLNSHSSCPVCRADATAAMPSPAVPHRSPEFGSGALNAHHSIDIVQIALVQNGLARR 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0893 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 144 IPR013083 -
Ssu5g0893 183 Pfam Ring finger domain 95 138 IPR001841 -
Ssu5g0893 183 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 3 183 - -
Ssu5g0893 183 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 183 IPR044675 -
Ssu5g0893 183 SUPERFAMILY RING/U-box 95 146 - -
Ssu5g0893 183 SMART ring_2 96 137 IPR001841 -
Ssu5g0893 183 CDD RING-H2_RNF111_like 95 140 - -
Ssu5g0893 183 MobiDBLite consensus disorder prediction 42 62 - -
Ssu5g0893 183 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0893 Ssu-Chr5 24616288 24616839 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0893 16 144 C3H Transcription Factor Family AT5G17600 33.577 2.33e-20 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0893 - - gmx:100809606 197.978