Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0889 ATGAAGCAGCCATCAAAGCCATGGAGGCCATTAACCACAAATTGCTGCGCAATCGAGGACCAAACTATCTTTGGCAATATCAGTCGCTGCAAGCCCGCAAGTTCAGATATATCCAATGATATTGCACAATTACCTAATTCATTTCATTGGCTGTCTTTCTCTGATATTAGTCATTTTTCGTCCATAAGATCCAATGAAGATCTTGCAGAGTCTTTTGCCTCGGATTTATATGATTTTCAGCTGAGTGAGCTGCATGCCGCTACTCAGAATTTTTCAAGTAATTTCTTGCTGGGTGAAGGAGGGTTTGGATCTGTTCATAAGGGTTATATAGATGCTAACTTGAGACGGGGTTTGAAAGCTCAACCTGTTGCTGTTAAGCTTCTCAACATTGAAGGTTTACAAGGACACCGTGAGTGGCTTGCGGAAGTGATATTTCTCGGGCAGCTAAAACACCAAAATTTGGTCAAGTTGATTGGATATTGTTACGAGGATGAGGAAAGGTTACTTATCTACGAATTCATGTCAAGGGGAAGCTTGGAGAATCACTTGTTCAGAAGAAAAACATCACTGTCATGGGCAGcaagattaaaaattacaataggTGCGGCTAAAGGCCTTGCCTTCTTGCATGGAGCTAAGAATCCAGTCATTTACCGAGACTTCAAGACTTCCAATATCTTGCTTGATTCAAATTTCACAGCGAAACTCTCAGATTTTGGACTTGCAAAAATGGTGCCAGAGGGATCAAAGTCGCATGTTACAACCAGAGTTTGGGGCACCTATGGATACGCAGCCCCAGAATATATCTCCACAGGGCACTTGACAACAAAAAGCGATGTCTATAGCTTCGGGGTAGTCCTGCTAGAACTGCTTACAGGAAGGAGGGCAATGGACAAGAAAAGACCAAAGACTGAGCAAAGCCTCGTGGATTGGTCAAAACCTTACTTGAGCAGTAGCAAGAAGTTGCGGTGCATTATGGATCCAAGGCTTGCTGGCCAATATTCTGGCAAGGGTGCAAAGGAGATGGCCCTTTTGGCATTGCAGTGCATAAGTTTGAATCCCAAAGACAGGCCAAGAATGCAAACGGCTGTTGAAACTCTTGAAGGCTTGCAACAGTTCAAGGACATGGCAGTTGCACATGGACACTGGCCACAATGTGCTAGAAATAGAGCATCCAATAAGGTGAAAATTGATCTTAGAGCCGGTGCAAACCACAAGAGGCTCTCTCCTCTAGTTTCAAACAGAACAACAACTTGA 1257 0.432 MKQPSKPWRPLTTNCCAIEDQTIFGNISRCKPASSDISNDIAQLPNSFHWLSFSDISHFSSIRSNEDLAESFASDLYDFQLSELHAATQNFSSNFLLGEGGFGSVHKGYIDANLRRGLKAQPVAVKLLNIEGLQGHREWLAEVIFLGQLKHQNLVKLIGYCYEDEERLLIYEFMSRGSLENHLFRRKTSLSWAARLKITIGAAKGLAFLHGAKNPVIYRDFKTSNILLDSNFTAKLSDFGLAKMVPEGSKSHVTTRVWGTYGYAAPEYISTGHLTTKSDVYSFGVVLLELLTGRRAMDKKRPKTEQSLVDWSKPYLSSSKKLRCIMDPRLAGQYSGKGAKEMALLALQCISLNPKDRPRMQTAVETLEGLQQFKDMAVAHGHWPQCARNRASNKVKIDLRAGANHKRLSPLVSNRTTT 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0889 418 ProSitePatterns Protein kinases ATP-binding region signature. 97 126 IPR017441 GO:0005524
Ssu5g0889 418 CDD STKc_IRAK 97 370 - -
Ssu5g0889 418 Gene3D Transferase(Phosphotransferase) domain 1 174 384 - -
Ssu5g0889 418 ProSiteProfiles Protein kinase domain profile. 91 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0889 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Ssu5g0889 418 SUPERFAMILY Protein kinase-like (PK-like) 66 374 IPR011009 -
Ssu5g0889 418 PANTHER OS01G0588500 PROTEIN-RELATED 36 407 - -
Ssu5g0889 418 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL15-RELATED 36 407 - -
Ssu5g0889 418 Gene3D Phosphorylase Kinase; domain 1 55 173 - -
Ssu5g0889 418 Pfam Protein tyrosine and serine/threonine kinase 97 367 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0889 Ssu-Chr5 24455963 24459632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0889 79 383 Glycoside Hydrolase AT3G07070 49.515 2.75e-98 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu5g0889 PK_Tyr_Ser-Thr 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0889 - - gmx:100804970 738.413