Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0887 ATGAGGCCACGCAGGGACAGCGATAGACGCAGATTCGCTCTCGAATCGGCCAACTCAGCAGGCTCGGAATCGCCGCGGCGAAGGCCGAAGCTGTTCGTTTTGATGGCGGGGCAATCGCGGAAATGGATGATCCTAGTGGCCACGATTTGGATTCAGGCCTTCACGGGGACCAATTTCGATTTCTCGCAGTACTCATCGTCGCTGAAATCCGCGCTCCACGTCTCGCAGGTGCAATTGAACTACCTCGCCACCGCCAACGACATGGGAAAGGTTTTCGGGTGGTCCTCTGGTCTTGCCCTCATGCACCTTCCTCTTTCTGTCGTTATGCTCATCGCTGCTTCCATGGGATTCTTCGGCTACGGCCTCCAGTGGCTCCTCATCACCGGTGTCGTCGATTTGCCTTATTCTCTgGTCTTTCTTCTGTGCCTTTTAGGTGGTTGTAGCATCTGTTGGTTCAACACAGTATGTTTTGTTCTCTGCATTAGGAATTTTCCAGTTAACCGAGCCCTTGCATTATCGCTCACTGTGAGTTTCAATGGCGTTAGTGCAGCACTCTACACCCTTGCTGCCAATTCAATTGACCCTTCATCTGATGCAATGTATCTGCTTTTGAATGCTCTTCTTCCCCTTCTCATTTGCATTGCAGCACTTGTTCCTATTCTTCGCCAACCAGCTTTAGACCCTCTCCCTCCTGATGCAGTAAACCGGGACTCAGTGATATTTCTAATATTGAACTTCTTAGCCATTTTAACTGGCCTTTATCTTCTCCTGTTTGGCTCATCTGCTTCTGGTGTGACCTCTGCTCGGCTCTATTTTGGTGGAGCCATTCTCCTCCTCATCTTCCCATTATGTATTCCTGGCATTGTATATGCTCGGGCTTGGTTTCGGCGTACCATCCATTCCAGCTTTCGGATGGAAAGCTCTAGCTTCATTCTTGTTCATGATGATGATCTTGAGATGCATAAAGAGCTCCATAGTCGTCGCAATAGTATTGTTAGTAATGGAGATACATACAGCCTGCTAAGTGACAATGGATACGTGTTTGGAAGTCAGAAGGAAAAAGATAGTGATGTGTGTTGCGAGAGGATGATTGGCCAGGATCAGTTGGCAGTGCTAGGAGAAGAGCACCCAGCTGCAGTAATTGTCCGCAGATTGGATTTCTGGCTATACTATATTACATACTTCTGTGGAGGTACACTTGGTCTAGTCTATAGCAATAATCTGGGACAGATTGCCCAATCTCTGGGCCAGAGTTCAAATACTTCTACACTTGTCACGCTCTATGCATCGTTTTCCTTTTTTGGTCGCTTGCTTTCAGCTGGACCAGACTATATTCGCAATAAGCTGTACTTTGCAAGGACTGGATGGCTATCAATTGCACTCATACCAACCCCAATTGCGTTCTTCTTCCTTGCTGCATCAGACAGTCTTCTGGCACTGCAGACAGGCACCGCACTGATTGGATTGAGTTCTGGTTTTATATTTGCAGCTGCTGTGTCAGTTACATCTGAGCTGTTTGGACCTAACAGTGTGGGCGTCAATCACAACATTCTCATAACAAATATCCCTACTGGATCTCTTCTCTATGGCTTTCTTGCTGCACTAGTTTATGATGCTAATGCACACTCAACACCAGGAAACTTGCCTGACTCAGCAGTGTGCATGGGAAGGCAGTGCTACTTCTGGACATTTGTCTGGTGGGGATGCATATCTGTCCTGGGACTAGCTTCAAGCGTGCTCTTATTCTTAAGAACCAAACATGCATATGATCATTTTGAGAAGCACCGTATTTCAACACAATCAATTGTGTCTTAA 1815 0.47 MRPRRDSDRRRFALESANSAGSESPRRRPKLFVLMAGQSRKWMILVATIWIQAFTGTNFDFSQYSSSLKSALHVSQVQLNYLATANDMGKVFGWSSGLALMHLPLSVVMLIAASMGFFGYGLQWLLITGVVDLPYSLVFLLCLLGGCSICWFNTVCFVLCIRNFPVNRALALSLTVSFNGVSAALYTLAANSIDPSSDAMYLLLNALLPLLICIAALVPILRQPALDPLPPDAVNRDSVIFLILNFLAILTGLYLLLFGSSASGVTSARLYFGGAILLLIFPLCIPGIVYARAWFRRTIHSSFRMESSSFILVHDDDLEMHKELHSRRNSIVSNGDTYSLLSDNGYVFGSQKEKDSDVCCERMIGQDQLAVLGEEHPAAVIVRRLDFWLYYITYFCGGTLGLVYSNNLGQIAQSLGQSSNTSTLVTLYASFSFFGRLLSAGPDYIRNKLYFARTGWLSIALIPTPIAFFFLAASDSLLALQTGTALIGLSSGFIFAAAVSVTSELFGPNSVGVNHNILITNIPTGSLLYGFLAALVYDANAHSTPGNLPDSAVCMGRQCYFWTFVWWGCISVLGLASSVLLFLRTKHAYDHFEKHRISTQSIVS 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0887 604 Gene3D MFS general substrate transporter like domains 382 594 IPR036259 -
Ssu5g0887 604 MobiDBLite consensus disorder prediction 1 25 - -
Ssu5g0887 604 SUPERFAMILY MFS general substrate transporter 249 587 IPR036259 -
Ssu5g0887 604 Pfam Nodulin-like 41 286 IPR010658 -
Ssu5g0887 604 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 24 604 - -
Ssu5g0887 604 SUPERFAMILY MFS general substrate transporter 22 223 IPR036259 -
Ssu5g0887 604 PANTHER NODULIN-LIKE/MFS TRANSPORTER 24 604 - -
Ssu5g0887 604 Gene3D MFS general substrate transporter like domains 4 220 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0887 Ssu-Chr5 24440234 24444453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0887 1 601 Nodulin-like Gene Family AT1G31470 57.471 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0887 - - gmx:100803546 1060.06