Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0881 ATGGAGATCACCAGAATGGGTCAATGGTTAAGTCTTCTGATATGTGTACTACTATTACTAAAGGCAGAAGGGGTTCCTGTGGGAATCACTTTTGTTGAAAATGCAGTGGCAAAAGGAGCTGTTTGTTTGGATGGGAGTCCACCGGCTTACCACTTTCATAAGGGATCTGGAGCAGGGATTAACAACTGGATTGTTCACTTTGAGGGAGGAGGATGGTGCAACAATGTCACTACTTGTCTTTCCCGTAGGGACACTCGCTTAGGTTCATCGAAGAAAATGGATAAGCAACTTTCCTTTTCTGGATTTTTTAGTAACAGTAAAAAGTTCAATCCAGATTTCTATGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCATTTACCGGTGATGTTGAAGCTGTCGATCCTGCAACCAATTTGCACTTCAGAGGAGCAAGAGTTTTTGTTGCTGTCATTGAGGATTTACTGGcaaaaggaatgaaaaatgCTCAAAATGCCATTATCTCTGGATGTTCTGCTGGAGGATTGGCTGCTATTTTAAATTGTGATCGATTCAAAACTCTACTACCTACAACAACTAAAGTGAAATGCCTTGCAGATGCTGGTTATTTTATCAATGTAAAGGATGTCTCCGGAGCACAGCACATTGAAGAGCTCTACAGTCAAGTTGTTCAAACACATgGCTCAGCAAAGAATTTGCCTAAATCCTGCACTTCAAGACTTAGACCAGGGCTGTGCTTTTTCCCACAAAATGTGGTATCGCAAATCAGTACACCAATCTTCTTTGTAAATGCAGCCTATGACTCTTGGCAGATCAAAAACATTGTGGCACCTGGTGTTGCTGATCCCCATGGCCAATGGCGTGAATGCAAgcttgatataaaaaattgctCACCGAATCAACTCAGTGTAATGCAAGGATTCAGGACAGATTTCTTAAGGGCATTTAGTGTGGTTGGGAACGCTCCATCTAAAGGGAATTTTATAGATGGTTGCTATGCACACTGCCAAACTGGAACGCAAGAGACATGGCTGAGAAATGACTCTCCAGTGTTGGCCAATACAACAATTGCAAAGGCAGTGGGAGATTGGTTTTACGATCGAAGGCCTTTCCGTCAGATAGATTGCGCCTACCCTTGCAACCCTACTTGCCATAATCGTGTTTTGATCAGAATGACCGTCCAGAAGTATAGATTCATTTAA 1209 0.4127 MEITRMGQWLSLLICVLLLLKAEGVPVGITFVENAVAKGAVCLDGSPPAYHFHKGSGAGINNWIVHFEGGGWCNNVTTCLSRRDTRLGSSKKMDKQLSFSGFFSNSKKFNPDFYDWNRIKVRYCDGSSFTGDVEAVDPATNLHFRGARVFVAVIEDLLAKGMKNAQNAIISGCSAGGLAAILNCDRFKTLLPTTTKVKCLADAGYFINVKDVSGAQHIEELYSQVVQTHGSAKNLPKSCTSRLRPGLCFFPQNVVSQISTPIFFVNAAYDSWQIKNIVAPGVADPHGQWRECKLDIKNCSPNQLSVMQGFRTDFLRAFSVVGNAPSKGNFIDGCYAHCQTGTQETWLRNDSPVLANTTIAKAVGDWFYDRRPFRQIDCAYPCNPTCHNRVLIRMTVQKYRFI 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0881 402 PANTHER NOTUM-RELATED 3 394 IPR004963 GO:0016787
Ssu5g0881 402 Pfam Pectinacetylesterase 21 371 IPR004963 GO:0016787
Ssu5g0881 402 PANTHER PECTIN ACETYLESTERASE 3 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0881 Ssu-Chr5 24227991 24232227 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0881 5 391 Carbohydrate Esterase AT4G19420 60.664 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0881 K19882 - gmx:100781246 759.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0881 5 24227991 24232227 Ssu5g0881 5 24227991 24232227 ECH