Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0880 ATGGGTTCCAATGGAAGCAAAGCCACTTCCTCTTGCagttcttcatcttcttcttcggGGAGTTTGAGGAAGGGTCGATCTAAGGGGCTTAGAGTTTTTCAATCTTATTGTCTTGGAACAACTTCTGGATCTCACGACAGTGATAATGAAGACCAGGTTTGTAATCAGAATAAAGAAAATGGCAGTGTTGTTACATACGCTGATGGCAATGGAACAGACTCAGATAAGGTGAAAACAGAGTCATTTAGAAAGGTTAAAGCTGGTGAAATAACTTGCATGCCTTCTAACATTGACCTTGATGGATGGGGGGAAACAAGCATCCCCAACACCTCATCCGGAACTGCTAGCAGCTCTATCCATTCTTCTTCATCTCATTCCTTGAACCCTACAAGTGGTTTCCTTTCTCAGTTTAGTGTCATTCCTGGTAATGTAAGCTTCAGACTTAGCAGAACAACCAGTTTGGGGTCATCAAGGCCTTGTCCTGTTTCTTCTGCAAGTCACTCAATATTTGACAATGAAGATGAGCATAATCTCCATCCCGGATCTCTTGGAAGTTTGATTAACAGAAGTGAAACACAACAATGTAGTAACTTGCTTCCTGCGtcttttttcaatcaaatacaTGCACAGTGTCATGAAGATGCTACTAATAATTTAAGGTCAAATTCCCCAGCATCAGGTGTAATTGTAAATTTGCAGAGTGATCCCGCAGGTGGAGTTTGTACAAGTGAAGGTCCGGATGTAGACTTATTTTCTCCGAGAATTCAAGTAGACACAGAAAATGTTGACACTAGACATATTGATCGACAAAATGTAGCTCGAGCATCAGTTGAACAGAATGTTCATTTTAGTCGAACTTTAAGTGTTGGAAGGCTTCGTGACAGAGTTCTTTGTCGATCAACATTATCTGATCTCACCTTTTTCCCTCTGCAACAAGAGAGGGAGCTGAGAGATACTAGCCTGCCTAGACAGGATATTGGAAGGCAAGCAGTGGAGGGAGATTCAAGAGTGTCACCATCTGATCATAGTGCCATTAATTCTTCTACATCTGGATATCCTCCATCTGGTATGTCTAATTCCACATTTGGCATTCAAGACTATGAGGTTGAGACTTCACGATTGAGAGAAGGTAGGTATCAAGATCTACTGGAACATAGGTCCAATTTCCTTGAACGGAGAAGAAGAATACGGTCCCAGgtTCGTGCTCTTCAGCGGTTGGGTAgccgttttgaaaatctttctggaCATGATAGATCATGTATCTTGTCTGGTCATCATAGAAATGGTCGTTGTACATGCCGAATCAGTAATCCTGACAGTAATTCAAATGATGAGACCGGTGCTAGAGCTAGCATTTCAAGAATTGTTATGCTTGCCGAAGCCTTATTTGAGgttctggACGAAATTCACCAGCAATCTGTTGTTTTATCTTCCCGCCCTTCTGTATCTTCTATTGGATCTGTGCCTGCACCTAATGATGTTGTGGAGTCCTTGCCTGTCAAATTATATGAGAAGTTGCATAAGCATCAAGAGGATGCTGCGCAATGCTATATATGCCTCGTGGAGTATGAAGATGGAGACTGCGTGCGAGTACTGCCTTGCCATCATGAATTTCATAGAACATGTGTAGACAAGTGGCTGAAGGAGATTCACAGGGTATGCCCACTTTGTCGCGGGGACATATGCATATCCGATTCAACGCCGACACAGAACTCGAGTGGCTAG 1725 0.411 MGSNGSKATSSCSSSSSSSGSLRKGRSKGLRVFQSYCLGTTSGSHDSDNEDQVCNQNKENGSVVTYADGNGTDSDKVKTESFRKVKAGEITCMPSNIDLDGWGETSIPNTSSGTASSSIHSSSSHSLNPTSGFLSQFSVIPGNVSFRLSRTTSLGSSRPCPVSSASHSIFDNEDEHNLHPGSLGSLINRSETQQCSNLLPASFFNQIHAQCHEDATNNLRSNSPASGVIVNLQSDPAGGVCTSEGPDVDLFSPRIQVDTENVDTRHIDRQNVARASVEQNVHFSRTLSVGRLRDRVLCRSTLSDLTFFPLQQERELRDTSLPRQDIGRQAVEGDSRVSPSDHSAINSSTSGYPPSGMSNSTFGIQDYEVETSRLREGRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGHHRNGRCTCRISNPDSNSNDETGARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPNDVVESLPVKLYEKLHKHQEDAAQCYICLVEYEDGDCVRVLPCHHEFHRTCVDKWLKEIHRVCPLCRGDICISDSTPTQNSSG 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0880 574 Pfam Ring finger domain 515 558 IPR001841 -
Ssu5g0880 574 MobiDBLite consensus disorder prediction 101 125 - -
Ssu5g0880 574 CDD mRING-H2-C3H2C2D_ZSWM2 515 558 - -
Ssu5g0880 574 MobiDBLite consensus disorder prediction 40 69 - -
Ssu5g0880 574 MobiDBLite consensus disorder prediction 1 28 - -
Ssu5g0880 574 MobiDBLite consensus disorder prediction 102 125 - -
Ssu5g0880 574 MobiDBLite consensus disorder prediction 40 76 - -
Ssu5g0880 574 SMART ring_2 516 557 IPR001841 -
Ssu5g0880 574 MobiDBLite consensus disorder prediction 1 24 - -
Ssu5g0880 574 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 573 - -
Ssu5g0880 574 ProSiteProfiles Zinc finger RING-type profile. 516 558 IPR001841 -
Ssu5g0880 574 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 573 - -
Ssu5g0880 574 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 479 562 IPR013083 -
Ssu5g0880 574 MobiDBLite consensus disorder prediction 318 362 - -
Ssu5g0880 574 SUPERFAMILY RING/U-box 494 565 - -
Ssu5g0880 574 MobiDBLite consensus disorder prediction 339 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0880 Ssu-Chr5 24101601 24106970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0880 218 571 C3H Transcription Factor Family AT5G45290 59.280 8.73e-115 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0880 - - gmx:100800896 899.042
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0880 5 24101601 24106970 Ssu5g0880 5 24101601 24106970 ECH