Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0861 ATGCCAGAAAACTGCATAGCACCCAAACCAGAACACAGCAACTGTCACCCTGAGGAAAACATAACTGTCCTTCCCATACAAACAAATGAGCAATCATTTCCAAAACTCACTATGTACCCTGTAACTTTGAAGTTTGAGGAATTGGTGTACAAAGTTAAAATAGAGCAGAAGGGTCTGTGTTGGGGCAGCAAAAGGAGTTCCAGAGAGAAAACCATACTGAAAGGAGTCACAGGCATGGTTTGTCCAGGAGAACTGATGGCTATGTTGGGGCCATCTGGCAGTGGCAAAACCACACTTCTTACAGCCCTTGGAGGAAGGCTTAGTGGCAAACTATCTGGAAAGGTGACATACAACAGCCAGCCTTTTTCAGGTGCCATGAAAAGAAGAACAGGTTTTGTGGCCCAGGATGATGTGCTATACCCTCATCTCACTGTCACTGAAACTCTACTCTTCACTGCACTCCTGAGGCTGCCCAACAGCTTGACCAAGGAAGAGAAAGTTCAGCATGTAGAGCATGTTATCAATGAGCTGGGACTGAGCAAGTGCAGGGGTAGCATGATTGGAGGCCCACTTTTCAGAGGGATATCAGGAGGGGAGAAAAAGAGGGTGAGCATAGGCCAGGAAATGCTCATCAATCCAAGCCTGTTGCTGCTGGATGAGCCCACTTCAGGGTTGGACTCTACAACAGCACAAAGGATCATAAGCACAATCAAACGCTTGGCTAGTGGGGGCAGAACTGTTGTCATCACGATTCATCAACCCTCTAGTCGCCTCTATCACATGTTTGATAAAGTGGTCTTGCTCTCTGAAGGATGCCCCATCTATTATGGCCCTGCTTCAACTGCAATGGACTACTTTTCTTCTGTTGGTTTTTCCACATCCATGATTGCCAATCCTGCTGACTTATTGCTTGATCTTGCCAATGGGATTGCTCCGGACTCCTCCAAGCATGCAACTGAACAAAGTGAGAGCCAGGAGGCAGAAAAGAAGTTGGTGAGAGAAGCTTTAATCTCTGCTTATGACAAGAACATAGCTACTAGGCTGAAAGATGAGCTATGTAGCTTGGAGGTGAATAACTACAATGTCATTAAGGATGCTTCCACAAGAAATCACATAAAACCGGAGCAATGGTGCACAAGTTGGTGGCATCAGTTCAAAGTGTTATTGCAAAGGGGCCTGAGGGAGAGAAGGTTTGAAGCCTTCAACAGACTGAGAATATTCCAAGTCATAAGTGTTGCTTTTCTTGGTGGACTCCTGTGGTGGCACACCCCAGAATCACACATTGGAGATCGTATAGCCCtgctctttttcttctctgtttTCTGGGGATTCTACCCTCTCTACAATGCTGTTTTCACATTTCCACAAGAGAGAAGAATGCTGATCAAGGAACGTTCATCTGGAATGTACCGTCTTTCTTCCTACTTTCTTGCTAGAACAGTAGGAGACTTGCCAATAGAGCTTGCACTTCCAACTGCATTTGTCGTCATAATCTATTGGATGGGAGGGCTTAAGCCTCATCCAGTGACCTTTCTCCTTTCCCTCTTTGTGGTCCTTTACAGTGTCCTTGTCTCTCAAAGCCTTGGCTTAGCATTTGGTGCCATTTTGATGGAGGTTAAACAGGCCACAACTTTAGCTTCTGTGACAACCCTTGTGTTCCTCATTGCTGGAGGGTACTATATACAACAGATCCCTCCCTTCATAGAGTGGCTCAAGTACTTGAGCTATAGCTACTATTGTTACAAGCTTCTTCTTGGTGTGCAGTacaatgatgatgattattatgaGTGCTCAAAGGGGGTCATGTGTAAGGTTGGAGATTTTCCTCCAATCAAATCAGTGGGTTTTAATCACTTGTGGGTTGATGTGTCTATTATGGCCATGATGTTGGTAGGTTACCGACTAGTTGCATATTTAGCACTACAGAGAGTGAGGTAG 1938 0.4458 MPENCIAPKPEHSNCHPEENITVLPIQTNEQSFPKLTMYPVTLKFEELVYKVKIEQKGLCWGSKRSSREKTILKGVTGMVCPGELMAMLGPSGSGKTTLLTALGGRLSGKLSGKVTYNSQPFSGAMKRRTGFVAQDDVLYPHLTVTETLLFTALLRLPNSLTKEEKVQHVEHVINELGLSKCRGSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAQRIISTIKRLASGGRTVVITIHQPSSRLYHMFDKVVLLSEGCPIYYGPASTAMDYFSSVGFSTSMIANPADLLLDLANGIAPDSSKHATEQSESQEAEKKLVREALISAYDKNIATRLKDELCSLEVNNYNVIKDASTRNHIKPEQWCTSWWHQFKVLLQRGLRERRFEAFNRLRIFQVISVAFLGGLLWWHTPESHIGDRIALLFFFSVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFLARTVGDLPIELALPTAFVVIIYWMGGLKPHPVTFLLSLFVVLYSVLVSQSLGLAFGAILMEVKQATTLASVTTLVFLIAGGYYIQQIPPFIEWLKYLSYSYYCYKLLLGVQYNDDDYYECSKGVMCKVGDFPPIKSVGFNHLWVDVSIMAMMLVGYRLVAYLALQRVR 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0861 645 Pfam ABC transporter 73 223 IPR003439 GO:0005524
Ssu5g0861 645 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 26 643 - -
Ssu5g0861 645 CDD ABCG_EPDR 40 277 - -
Ssu5g0861 645 SMART AAA_5 82 272 IPR003593 -
Ssu5g0861 645 Pfam ABC-2 type transporter 384 589 IPR013525 GO:0016020|GO:0140359
Ssu5g0861 645 ProSitePatterns ABC transporters family signature. 195 209 IPR017871 GO:0005524
Ssu5g0861 645 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 288 IPR027417 -
Ssu5g0861 645 Gene3D - 60 289 IPR027417 -
Ssu5g0861 645 PANTHER ABC TRANSPORTER, G1, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 26 643 - -
Ssu5g0861 645 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 43 295 IPR003439 GO:0005524
Ssu5g0861 645 Pfam ABC-2 type transporter 252 319 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0861 Ssu-Chr5 22791968 22795207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0861 72 271 Calmodulin-binding Proteins AT2G36910 30.000 5.31e-13 70.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0861 5 22791968 22795207 Ssu5g0861 5 22791968 22795207 ECH