Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0860 ATGGCAGCAGTTTCAGGGGATGAGATACGGAAGGCCCACATGGCCATGGCAATGGTGCAGTTATTTTATGGAGGCTATCACGTCATAACCAAATTGGCCCTTAACGTTGGGGTCAACCAAATCGTCTTCTGCGTCTTCCGCGATCTCATTGCCCTCGCCATTCTCGCTCCCCTCGCTTATATCCGTGAAAAGCGTACGCGGCCACCCTTAACCAAGCGCCTTCTGATgtcattcttctttcttggaTTAACTGGGATATTTGGCAACcatcttttgtttcttattggCTTAAGCTATACTAATCCAACTTATGCTGCTGCAATTCAGCCAGCCATTCCGGTCTTTACTTTTCTGTTGGCTGTAATGATGGGTACAGAAAGAGTGAACTTGCTAAGATATGAAGGTCTGGCCAAGGTTGGAGGAACGTTTTCCTGTGTTTTAGGTGCTGTACTGATGGTTTTGTATCGTGGTCCGGCATTGATAGGATATTCAGAAATGGACTTTGTATCACTAAATGAAATAAGTGCCAAAGGTCAACCAGAGCCTTCTGGATGGTTAATTGGTGGTTTACTGGATCTCGGATTAGACCATTTTCATCTCGGGGTTTTGTGCTTAATAGGGAACTGCATGTGCATGGCTGCTTTTCTAGCCATTCAGGCtccattattaaaaaagtatcctGCAAACCTATCTGTCACAGCATATTCATACTTCTTTGGAGCTGTACTGATGGTAACTACATCATTCTTTGCAACTGAAGAGTCAACTGACTGGAGATTGACACAGTCCGAAACGATTGCTGTTATTTATGCCGGATTTATTGCATCTGCCCTTAATTATGGACTCATTACATGGTGCAACAAGATCTTGGGGCCAGCCATGGTTGCTCTGTATAATCCACTTCAACCTGGAGCTTCTGCTATTCTATCCAGGATTTTTCTTGGAAGTCCAATTTACATGGGAAGCATCATAGGGGGATCTTTGATCATTATTGGTTTGTATGCGGTTACTTGGGCGTCTTATAGAGAAAGACACGCAGCTGCTGGAGTTATTTCTCATGGCTCTTGGGTCTCTGAATCATTTGTCCGTGACAAGAGTTCTCATAGAGTTAACATTTTCTCAAGCCCTTCCAGCGTCTCCCCAAAGCCTTCGGATTAA 1158 0.4249 MAAVSGDEIRKAHMAMAMVQLFYGGYHVITKLALNVGVNQIVFCVFRDLIALAILAPLAYIREKRTRPPLTKRLLMSFFFLGLTGIFGNHLLFLIGLSYTNPTYAAAIQPAIPVFTFLLAVMMGTERVNLLRYEGLAKVGGTFSCVLGAVLMVLYRGPALIGYSEMDFVSLNEISAKGQPEPSGWLIGGLLDLGLDHFHLGVLCLIGNCMCMAAFLAIQAPLLKKYPANLSVTAYSYFFGAVLMVTTSFFATEESTDWRLTQSETIAVIYAGFIASALNYGLITWCNKILGPAMVALYNPLQPGASAILSRIFLGSPIYMGSIIGGSLIIIGLYAVTWASYRERHAAAGVISHGSWVSESFVRDKSSHRVNIFSSPSSVSPKPSD 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0860 385 Pfam EamA-like transporter family 200 337 IPR000620 GO:0016020|GO:0016021
Ssu5g0860 385 Pfam EamA-like transporter family 14 136 IPR000620 GO:0016020|GO:0016021
Ssu5g0860 385 PANTHER WAT1-RELATED PROTEIN 11 373 - -
Ssu5g0860 385 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 137 - -
Ssu5g0860 385 PANTHER WAT1-RELATED PROTEIN 11 373 IPR030184 GO:0016021|GO:0022857
Ssu5g0860 385 SUPERFAMILY Multidrug resistance efflux transporter EmrE 256 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0860 Ssu-Chr5 22700077 22709467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0860 95 368 Nodulin-like Gene Family AT5G45370 64.516 1.37e-123 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0860 - - gmx:100781969 660.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0860 5 22700077 22709467 Ssu5g0860 5 22700077 22709467 ECH