Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu5g0843 | ATGAGTGATTCAAAAGAGAATGAGGAAGCAGGGCAGAATGTGCTCTTGGCTGTGGAAGAAACCCAGCAGTTTGTTGAAGCACAGGTTCAACCTGAAGGTTTGGCTGCTCCAGTGTCCATTGGGGATACTTCAAATCATGTTGAAAATGGGAAGGTAGAGGTAGAGGCACCTGCAGAGGATAAAAATGCAAAACCAGAAGCCAATTCAGAGTGCATTCCTCAACAAGATGTTGTAAATAGTGAAAATACTCTTCACTCAATCCCTGTAATGGACAATGCTCAAGTTTTACATAAAACTGAAGGCAAACATGCATCAGATGTGAAGAGCAAATCTGCAGAAGTTCCTCAGCATGATAAGGGCACCGAGAATGGTGCTAATGTTCGTCAAAGCAATGCTGATACTGCTGAAACAACTGTGGAGGTGAAGCCTGAAGCTTTTGACGTGGCTGATATTAAAACTTGCAATAATGGTGACTCCAACTCCATACGCTCTAGTCATAATGAGCCTAATACCCCGCAAGCCGTTCCTACTGATATAAAAGCTGAAATCAAGAGTGGATTAGAAATCAAGAATAAGGATAATGAAAAGCAGGATGCTGTTGCATGTGCAGATAACGGAAATTTGATCTCAAAAAACTTGTATTTTTTGGATCCTGACTATTCATATGATGGTAATGAGTCAGGAACAGAAGAGGAGCAGTCAGCTTTTATGAAGGAGCTTGAAAATTTCTTTAGGGAGAGGAGCATGGAATTCAAACCACCCAAATTCTATAAAGAGGGGCTTAATTGTCTCAAGTTATGGAGATCTGTAAACAGATTGGGTGGCTATGATAAGgTTACCTCATGTAAATTGTGGCGACAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGCACCACAGTTTCATGGTCTTTTCGGGTTTTTTATGAGAAGGCACTTCTTGACTATGAAAGGCATAAAACAAAAGGCGGTGAGCTGAATCTGCCTATTACTTCTCATTCAGAGCCAATGAATATTGAAAATCagGGTTCAGCATCAGGTAGGGCACGGAGAGATGCTGCAGCAAGGGCTATGCAGGGTTGGCACTCACAACGTCTCCTGGGTAATGGTGAAGTTAGTGATCCTATTATTAAGGATAGGAATTCTTTGTCTACGCAAAAGCGTGAAAAGCAGCTTAAAAGCATCAATTTACTTAAACGCCAGAAACCATCAGACATGGATAATGCAGTCAAAGTGGCACACAGTAAACCATCTAAACCACAGTTGGACACATCTGTGGTTGACATTGGACCTCCTGCTGATTGGGTAAAAATCAATGTGCAAAAAACTAAAGATTGTTTTGAGGTCTATGCTTTAGTTCCTGGCCTTCTGCGGGAAGAGGTGCGTGTTCAATCAGACCCAGCTGGACGCTTGGTCATAAGTGGTGAGCCCGAGCATTCTGACAATCCATGGGGGGTGACACCTTTCAAGAAGGTTGTCAGCTTGAATTCAAGAATTGATACTCGTCAGACGTCAGCTGTGGTGACCTTGCATGGACAGTTGTTTGTTCGAGTTCCATTTGAGCAATCAGAATAG | 1575 | 0.4241 | MSDSKENEEAGQNVLLAVEETQQFVEAQVQPEGLAAPVSIGDTSNHVENGKVEVEAPAEDKNAKPEANSECIPQQDVVNSENTLHSIPVMDNAQVLHKTEGKHASDVKSKSAEVPQHDKGTENGANVRQSNADTAETTVEVKPEAFDVADIKTCNNGDSNSIRSSHNEPNTPQAVPTDIKAEIKSGLEIKNKDNEKQDAVACADNGNLISKNLYFLDPDYSYDGNESGTEEEQSAFMKELENFFRERSMEFKPPKFYKEGLNCLKLWRSVNRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWSFRVFYEKALLDYERHKTKGGELNLPITSHSEPMNIENQGSASGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRNSLSTQKREKQLKSINLLKRQKPSDMDNAVKVAHSKPSKPQLDTSVVDIGPPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHSDNPWGVTPFKKVVSLNSRIDTRQTSAVVTLHGQLFVRVPFEQSE | 524 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu5g0843 | 524 | ProSiteProfiles | Small heat shock protein (sHSP) domain profile. | 424 | 524 | IPR002068 | - | |
Ssu5g0843 | 524 | PANTHER | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE | 32 | 523 | - | - | |
Ssu5g0843 | 524 | MobiDBLite | consensus disorder prediction | 122 | 137 | - | - | |
Ssu5g0843 | 524 | CDD | ACD_sHsps_p23-like | 443 | 519 | - | - | |
Ssu5g0843 | 524 | SMART | bright_3 | 231 | 322 | IPR001606 | GO:0003677 | |
Ssu5g0843 | 524 | ProSiteProfiles | ARID domain profile. | 230 | 321 | IPR001606 | GO:0003677 | |
Ssu5g0843 | 524 | SUPERFAMILY | HSP20-like chaperones | 433 | 520 | IPR008978 | - | |
Ssu5g0843 | 524 | MobiDBLite | consensus disorder prediction | 327 | 355 | - | - | |
Ssu5g0843 | 524 | Gene3D | - | 421 | 524 | IPR008978 | - | |
Ssu5g0843 | 524 | Gene3D | - | 230 | 328 | IPR036431 | GO:0003677 | |
Ssu5g0843 | 524 | CDD | ARID | 232 | 317 | - | - | |
Ssu5g0843 | 524 | Pfam | Hsp20/alpha crystallin family | 441 | 523 | IPR002068 | - | |
Ssu5g0843 | 524 | MobiDBLite | consensus disorder prediction | 98 | 117 | - | - | |
Ssu5g0843 | 524 | SUPERFAMILY | ARID-like | 224 | 334 | IPR036431 | GO:0003677 | |
Ssu5g0843 | 524 | SMART | ARID_2 | 227 | 317 | - | - | |
Ssu5g0843 | 524 | MobiDBLite | consensus disorder prediction | 98 | 137 | - | - | |
Ssu5g0843 | 524 | Pfam | ARID/BRIGHT DNA binding domain | 233 | 317 | IPR001606 | GO:0003677 | |
Ssu5g0843 | 524 | PANTHER | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT | 32 | 523 | IPR045147 | GO:0006357 | |
Ssu5g0843 | 524 | MobiDBLite | consensus disorder prediction | 327 | 345 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu5g0843 | Ssu-Chr5 | 21896371 | 21918799 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu5g0843 | 214 | 522 | ARID Transcription Factor Family | AT1G76510 | 61.146 | 2.33e-130 | 384 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | ARID | Ssu5g0843 | HSP20 | 0.00022 | CL0190 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu5g0843 | - | - | vun:114176226 | 855.129 |