Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0843 ATGAGTGATTCAAAAGAGAATGAGGAAGCAGGGCAGAATGTGCTCTTGGCTGTGGAAGAAACCCAGCAGTTTGTTGAAGCACAGGTTCAACCTGAAGGTTTGGCTGCTCCAGTGTCCATTGGGGATACTTCAAATCATGTTGAAAATGGGAAGGTAGAGGTAGAGGCACCTGCAGAGGATAAAAATGCAAAACCAGAAGCCAATTCAGAGTGCATTCCTCAACAAGATGTTGTAAATAGTGAAAATACTCTTCACTCAATCCCTGTAATGGACAATGCTCAAGTTTTACATAAAACTGAAGGCAAACATGCATCAGATGTGAAGAGCAAATCTGCAGAAGTTCCTCAGCATGATAAGGGCACCGAGAATGGTGCTAATGTTCGTCAAAGCAATGCTGATACTGCTGAAACAACTGTGGAGGTGAAGCCTGAAGCTTTTGACGTGGCTGATATTAAAACTTGCAATAATGGTGACTCCAACTCCATACGCTCTAGTCATAATGAGCCTAATACCCCGCAAGCCGTTCCTACTGATATAAAAGCTGAAATCAAGAGTGGATTAGAAATCAAGAATAAGGATAATGAAAAGCAGGATGCTGTTGCATGTGCAGATAACGGAAATTTGATCTCAAAAAACTTGTATTTTTTGGATCCTGACTATTCATATGATGGTAATGAGTCAGGAACAGAAGAGGAGCAGTCAGCTTTTATGAAGGAGCTTGAAAATTTCTTTAGGGAGAGGAGCATGGAATTCAAACCACCCAAATTCTATAAAGAGGGGCTTAATTGTCTCAAGTTATGGAGATCTGTAAACAGATTGGGTGGCTATGATAAGgTTACCTCATGTAAATTGTGGCGACAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGCACCACAGTTTCATGGTCTTTTCGGGTTTTTTATGAGAAGGCACTTCTTGACTATGAAAGGCATAAAACAAAAGGCGGTGAGCTGAATCTGCCTATTACTTCTCATTCAGAGCCAATGAATATTGAAAATCagGGTTCAGCATCAGGTAGGGCACGGAGAGATGCTGCAGCAAGGGCTATGCAGGGTTGGCACTCACAACGTCTCCTGGGTAATGGTGAAGTTAGTGATCCTATTATTAAGGATAGGAATTCTTTGTCTACGCAAAAGCGTGAAAAGCAGCTTAAAAGCATCAATTTACTTAAACGCCAGAAACCATCAGACATGGATAATGCAGTCAAAGTGGCACACAGTAAACCATCTAAACCACAGTTGGACACATCTGTGGTTGACATTGGACCTCCTGCTGATTGGGTAAAAATCAATGTGCAAAAAACTAAAGATTGTTTTGAGGTCTATGCTTTAGTTCCTGGCCTTCTGCGGGAAGAGGTGCGTGTTCAATCAGACCCAGCTGGACGCTTGGTCATAAGTGGTGAGCCCGAGCATTCTGACAATCCATGGGGGGTGACACCTTTCAAGAAGGTTGTCAGCTTGAATTCAAGAATTGATACTCGTCAGACGTCAGCTGTGGTGACCTTGCATGGACAGTTGTTTGTTCGAGTTCCATTTGAGCAATCAGAATAG 1575 0.4241 MSDSKENEEAGQNVLLAVEETQQFVEAQVQPEGLAAPVSIGDTSNHVENGKVEVEAPAEDKNAKPEANSECIPQQDVVNSENTLHSIPVMDNAQVLHKTEGKHASDVKSKSAEVPQHDKGTENGANVRQSNADTAETTVEVKPEAFDVADIKTCNNGDSNSIRSSHNEPNTPQAVPTDIKAEIKSGLEIKNKDNEKQDAVACADNGNLISKNLYFLDPDYSYDGNESGTEEEQSAFMKELENFFRERSMEFKPPKFYKEGLNCLKLWRSVNRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWSFRVFYEKALLDYERHKTKGGELNLPITSHSEPMNIENQGSASGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRNSLSTQKREKQLKSINLLKRQKPSDMDNAVKVAHSKPSKPQLDTSVVDIGPPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHSDNPWGVTPFKKVVSLNSRIDTRQTSAVVTLHGQLFVRVPFEQSE 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0843 524 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 424 524 IPR002068 -
Ssu5g0843 524 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 32 523 - -
Ssu5g0843 524 MobiDBLite consensus disorder prediction 122 137 - -
Ssu5g0843 524 CDD ACD_sHsps_p23-like 443 519 - -
Ssu5g0843 524 SMART bright_3 231 322 IPR001606 GO:0003677
Ssu5g0843 524 ProSiteProfiles ARID domain profile. 230 321 IPR001606 GO:0003677
Ssu5g0843 524 SUPERFAMILY HSP20-like chaperones 433 520 IPR008978 -
Ssu5g0843 524 MobiDBLite consensus disorder prediction 327 355 - -
Ssu5g0843 524 Gene3D - 421 524 IPR008978 -
Ssu5g0843 524 Gene3D - 230 328 IPR036431 GO:0003677
Ssu5g0843 524 CDD ARID 232 317 - -
Ssu5g0843 524 Pfam Hsp20/alpha crystallin family 441 523 IPR002068 -
Ssu5g0843 524 MobiDBLite consensus disorder prediction 98 117 - -
Ssu5g0843 524 SUPERFAMILY ARID-like 224 334 IPR036431 GO:0003677
Ssu5g0843 524 SMART ARID_2 227 317 - -
Ssu5g0843 524 MobiDBLite consensus disorder prediction 98 137 - -
Ssu5g0843 524 Pfam ARID/BRIGHT DNA binding domain 233 317 IPR001606 GO:0003677
Ssu5g0843 524 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 32 523 IPR045147 GO:0006357
Ssu5g0843 524 MobiDBLite consensus disorder prediction 327 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0843 Ssu-Chr5 21896371 21918799 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0843 214 522 ARID Transcription Factor Family AT1G76510 61.146 2.33e-130 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Ssu5g0843 HSP20 0.00022 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0843 - - vun:114176226 855.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0843 5 21896371 21918799 Ssu5g0843 5 21896371 21918799 ECH
Ssu2g2136 2 77131919 77138241 Ssu5g0843 5 21896371 21918799 PCT