Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0842 ATGACCCTGCAGGCTGATTCAGCAGCAGCAGCACCGGATTCCGCAACCACCAACGGCGTCGCCACCACCCTAGACGAATCCCCACAACCGCCGCCATCACCTCCTCCGCCGCCGTCGCTTCCAAACCCGCCGCCCGAACTGCGCGTGCCACTATGGTGGCCGGAAGACGGCAACCTCGGCATGGACTGGATAGAGAACCTGATGTCGTGCTTCGATTGGTGTTCTCGGAACCTCCCTCCCTCGGAGTTCCCCTCGGTTCTCCCCGTCCACGTCTTCGACTCTCTCATCCTCGTCGCCTCCAAGATGCTCCACAAGGAGCCCAATTGCGTCACCGTAGACCCCTTTCGCCCTGGCCCCGATGACTCTTCCTCCGCTGCCGCCGCCTCCGTCGTCGTCGTCGGCGACGTTCACGGCCAGCTGCACGATCTGCTTTTCCTCCTCCGAGACGCCGGGTTCCCCTCCCGAGATCGAATCTTTGTCTTCAACGGGGATTACGTGGATCGGGGAGCGTGGGGTCTTGAAACCTTCTTGCTCTTGTTGGCTTGGAAGGTGTTCATGCCACATAACATATATTTGCTACGAGGGAATCATGAATCAAAATACTGTACATCGGTTTATGGTTTTGAGAAAGAAGTAATGGTAAAGTATGGTGATAAAGGTAAGCATGTGTACCGGAAATGTTTGGGGTGCTTTGAAGGTCTTCCTTTGGCTTCTATTATAGCAGGGTGTGTATACACGGCTCATGGAGGACTTTTCCGCAGTGTAACTGTGATGCCGTCAAAGAGgttaaaaggaaagaagaacCGTAAGATTAATGTTAATCATGATAGCAAAATTCTATCTCTTGGTTCTTTGGAAGAATTGTCCAAGGCTCGACGATCAGTTCTGGATCCTCCTTGGGAAGGCCCAAACTTGATTCCTGGTGATGTTTTGTGGTCTGATCCATCAAAAACTCCTGGTCTTGCTCCAAACAAAGAAAGAGGCATTGGCTTGTTGTGGGGTCCTGATTGTACAGAAGAATTTTTGAAGAAGTACCaactaaaattgATCATCAGGTCTCATGAAGGTCCTGATGCTAGGGAAAAAAGGGATGGTTTTGATGGAATGGATGAAGGTTACACTATTGATCATATTGTAGATTCTGGAAAGCTGGTCACCCTGTTTAGTGCTCCAGATTACCCACAATTTCAGGCAACAGAGGAGAGGTATGACAACAAAGGTGCCTATGTTGTCCTCGAACCACCGAATTTTGACAATCCTATATTTCATGGATTTTCAGCAGTTACTCCAAGGCCGAAGGTGAATGCCTATTACGATTACGAAGAGGTGATAGACTCCGATGAAGAGTTGGACTTGGCTTCAATGGTAACTACTTGA 1377 0.4909 MTLQADSAAAAPDSATTNGVATTLDESPQPPPSPPPPPSLPNPPPELRVPLWWPEDGNLGMDWIENLMSCFDWCSRNLPPSEFPSVLPVHVFDSLILVASKMLHKEPNCVTVDPFRPGPDDSSSAAAASVVVVGDVHGQLHDLLFLLRDAGFPSRDRIFVFNGDYVDRGAWGLETFLLLLAWKVFMPHNIYLLRGNHESKYCTSVYGFEKEVMVKYGDKGKHVYRKCLGCFEGLPLASIIAGCVYTAHGGLFRSVTVMPSKRLKGKKNRKINVNHDSKILSLGSLEELSKARRSVLDPPWEGPNLIPGDVLWSDPSKTPGLAPNKERGIGLLWGPDCTEEFLKKYQLKLIIRSHEGPDAREKRDGFDGMDEGYTIDHIVDSGKLVTLFSAPDYPQFQATEERYDNKGAYVVLEPPNFDNPIFHGFSAVTPRPKVNAYYDYEEVIDSDEELDLASMVTT 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0842 458 PRINTS Serine/threonine phosphatase family signature 289 316 IPR006186 GO:0016787
Ssu5g0842 458 PRINTS Serine/threonine phosphatase family signature 383 399 IPR006186 GO:0016787
Ssu5g0842 458 PRINTS Serine/threonine phosphatase family signature 159 186 IPR006186 GO:0016787
Ssu5g0842 458 PRINTS Serine/threonine phosphatase family signature 192 216 IPR006186 GO:0016787
Ssu5g0842 458 PRINTS Serine/threonine phosphatase family signature 229 255 IPR006186 GO:0016787
Ssu5g0842 458 PRINTS Serine/threonine phosphatase family signature 129 156 IPR006186 GO:0016787
Ssu5g0842 458 SMART pp2a_7 87 432 IPR006186 GO:0016787
Ssu5g0842 458 SUPERFAMILY Metallo-dependent phosphatases 82 433 IPR029052 -
Ssu5g0842 458 Gene3D - 82 449 IPR029052 -
Ssu5g0842 458 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 37 455 - -
Ssu5g0842 458 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 7 37 455 - -
Ssu5g0842 458 MobiDBLite consensus disorder prediction 1 26 - -
Ssu5g0842 458 MobiDBLite consensus disorder prediction 1 48 - -
Ssu5g0842 458 Pfam Calcineurin-like phosphoesterase 129 357 IPR004843 GO:0016787
Ssu5g0842 458 MobiDBLite consensus disorder prediction 27 48 - -
Ssu5g0842 458 ProSitePatterns Serine/threonine specific protein phosphatases signature. 193 198 IPR006186 GO:0016787
Ssu5g0842 458 CDD MPP_PP7 53 439 IPR041754 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0842 Ssu-Chr5 21876512 21895222 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0842 50 349 Calmodulin-binding Proteins AT5G63870 69.435 2.30e-154 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0842 K04460 - gmx:100802851 822.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0842 5 21876512 21895222 Ssu5g0842 5 21876512 21895222 ECH