Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0828 ATGGTGCCTGAAATCATTGATCTTACAAACTCCCCTCCATCCCCACCCAGGTCATCTAATGTACCTATAGTTCTCAATTCTCTTAGACAAATTCAATTTGAGAAAGCTCCTTTGCCCTTAATGGCTTGCACAAATCCCAATCCGAGCCAGaccaaccaacaacaaattaCTACTTTATGGCCAATTTCAGGACATACCTCTGAGTCCTCTCAAATTGTTACTAGGTTCCAACCTGACATGCAGGGTGGGGTTGTTAGAATACTTGAACCAATACTTGAATCAAACACATACTTAGATCCTCATGGAGCTTGGTTCAATGAGCCTTGGACCCAAAGAGAGCATGAGTTATTTGTGATGGGACTAATCAAGTATGGAAAAGGGcgttggaccaaaattgctaGAGACTTTGTCTGCAGCAAGACACCGCAAGAAGTTCAAAGTTATGCTGCCAACTTTTCCAGGCACCTACCACCACCAACATACCCACATGGCTTTAGGAGAAGGAACCCAACCTACACTGCACCTTACCTCATTTTCAAGAATTGGAACCTTATGGTGGGTGCATCTACCTTATACTCCATGCCTATAGTTGTTAACCAGTCACAGCAACTCCTCACACCTGTCTTAGTGAATGTTCCTTTCCTTCTAGCTCCACCATATGGAGAAGCTAGCACCAACACCATCATGTATGGGTTCCAGATGCATACAAGTGCTACAACTGCAAGCAACACTTCCATGAATGCTATTGCTAGTGCTAATGAAGAAATTGATTTGGAGTTACGCTTGGGTCCAAGCCAGTGA 801 0.4195 MVPEIIDLTNSPPSPPRSSNVPIVLNSLRQIQFEKAPLPLMACTNPNPSQTNQQQITTLWPISGHTSESSQIVTRFQPDMQGGVVRILEPILESNTYLDPHGAWFNEPWTQREHELFVMGLIKYGKGRWTKIARDFVCSKTPQEVQSYAANFSRHLPPPTYPHGFRRRNPTYTAPYLIFKNWNLMVGASTLYSMPIVVNQSQQLLTPVLVNVPFLLAPPYGEASTNTIMYGFQMHTSATTASNTSMNAIASANEEIDLELRLGPSQ 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0828 266 SMART sant 105 155 IPR001005 -
Ssu5g0828 266 ProSiteProfiles Myb-like domain profile. 108 153 IPR001005 -
Ssu5g0828 266 MobiDBLite consensus disorder prediction 1 20 - -
Ssu5g0828 266 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 30 263 - -
Ssu5g0828 266 PANTHER MYB-LIKE DNA-BINDING DOMAIN PROTEIN 30 263 - -
Ssu5g0828 266 CDD SANT 108 152 IPR001005 -
Ssu5g0828 266 Pfam Myb-like DNA-binding domain 108 149 IPR001005 -
Ssu5g0828 266 SUPERFAMILY Homeodomain-like 108 155 IPR009057 -
Ssu5g0828 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 157 IPR017930 -
Ssu5g0828 266 Gene3D - 107 156 - -
Ssu5g0828 266 ProSiteProfiles SANT domain profile. 105 157 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0828 Ssu-Chr5 21421446 21422478 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu5g0828 Myb_DNA-binding 8.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0828 - - gmx:102659381 281.567