Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0827 ATGATACTCAACTCAAGCTATATTGCAAGCCTGACCTCCATCCTAACCGTGGAACAGCTCTCTTCCCCAGTTAAAGGAATTGAAAGCTTAGTAATAAGCAACGACCGCATAGGTTTCCTGAAGGGTTCATTTTCTGAAAATTATCTGACTGAGGAGCTCAACATACACAGGTCCAGGCTTGTTCCTCTCAATTCCACATCAGAATATGAAAAAGCCTTGAGGGATGGGCCAGCTAGTGGTGGTGTTGCTGCAATAATAGATGAACGTGCATACATGGAGCTCTTCCTAGCGACCAGATGTGAATTAGGTATTGTTGGCCAAGAGTTCACCAAGATGGGATGGGGTTTTGCAAGGCAAAAGGAGAAGTGCTCTTGTAGAAAGGTAGTAGTGCATGAAGATGGATCTTTGATGACTCTAGTGTTTGTGTCCATGCAGAAAATAATGCCACTGCCTAAGGTCAGTCATGACGTTATGAGTGTCATTACCCTTCAAAAGTTTGATGGTCGTCCATCATCCTATGTGGAAAAGGTTCATGGAGTTTTACATGATTGCATGAATTGCTGCCTCCAACAGAGGCCTCAACGGAGGAACTTGAGCATCTATATGGACCCTTTGGAAAACAGAAGTGAGGAATTTTTCGAGGAACAGAGCAGAATGAATGGGAAATTTTCACTAGAGTAA 681 0.4332 MILNSSYIASLTSILTVEQLSSPVKGIESLVISNDRIGFLKGSFSENYLTEELNIHRSRLVPLNSTSEYEKALRDGPASGGVAAIIDERAYMELFLATRCELGIVGQEFTKMGWGFARQKEKCSCRKVVVHEDGSLMTLVFVSMQKIMPLPKVSHDVMSVITLQKFDGRPSSYVEKVHGVLHDCMNCCLQQRPQRRNLSIYMDPLENRSEEFFEEQSRMNGKFSLE 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0827 226 Pfam Ligand-gated ion channel 1 132 IPR001320 GO:0015276|GO:0016020
Ssu5g0827 226 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 121 - -
Ssu5g0827 226 SUPERFAMILY Periplasmic binding protein-like II 6 122 - -
Ssu5g0827 226 Gene3D - 10 118 - -
Ssu5g0827 226 PANTHER GLUTAMATE RECEPTOR 1 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0827 Ssu-Chr5 21392974 21397003 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0827 1 117 Ion Channels AT3G51480 71.795 1.02e-52 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0827 K05387 - gmx:100789442 217.238