Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0826 ATGAGCAAAGTTTGGCTTCTTGTCCTTGTGATCCTCTACTGTGGCTTTCCCTCCAAAGGAACCAGCAATGTTTCTACAAGACCAAGACCAAGTGCCGTTAACATTGGGGCAATTTTATCTTTCAACTCAACAATTGGCAGAGTGGCTAAAGTTGCCATACAAGCAGCAGTGCATGATATAAATTCCAATGCAACGATTCTCAAAGGAACTAAGCTTAATATTTCAATGCTGGACACCAAATTATCCACTGGATTCCTAGGAATCATTGCTTGTACGTCCTTCTCAAACACATGA 294 0.4116 MSKVWLLVLVILYCGFPSKGTSNVSTRPRPSAVNIGAILSFNSTIGRVAKVAIQAAVHDINSNATILKGTKLNISMLDTKLSTGFLGIIACTSFSNT 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0826 97 PANTHER GLUTAMATE RECEPTOR 11 92 - -
Ssu5g0826 97 SUPERFAMILY Periplasmic binding protein-like I 29 84 IPR028082 -
Ssu5g0826 97 Gene3D - 30 97 - -
Ssu5g0826 97 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 11 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0826 Ssu-Chr5 21390291 21390584 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0826 1 94 Ion Channels AT1G42540 39.362 6.41e-17 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0826 K05387 - gmx:100790502 138.272