Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0824 ATGAGCAAAGTTTGGCTTCTTGTCCTTGTGATCCTCTACTGTGGCTTTCCCTCCAAAGGAACCAGCAATGTTTCTACAAGACCAAGACCAAGTGCCGTTAACATTGGGGCAATTTTATCTTTCAACTCAACAATTGGCAGAGTGGCTAAAGTTGCCATACAAGCAGCAGTGCATGATATAAATTCCAATGCAACGATTCTCAAAGGAACTAAGCTTAATATTTCAATGCTGGACACCAAATTATCCACTGGATTCCTAGGAATCATTGCTTGTTTAGCTTTTCAACCCTATTTTTTGCACATACTGAAAAATGGTTTGACATCTCAGAGAAACCCCTTATATGCAGGAGAGAAAACTGTCAGCACCCTTGGTCGCTTAGTGCTAATCATATGGCTGTTTGTGGTTTTGATACTCAACTCAAGCTATATTGCAAGCCTGACCTCCATCTTAACCGTGGAACAGCTCTCTTCCCCGGTTAAGGGAATTGAAAGCTTAGTAACAAGCAACGACCGCATTGGTTTCCTGAAGGGTACATTTGCTGAAAATTATCTGACTGAGGAGCTCAACATACCCAGGTCCAGGCTTGTTCCTCTAAACTCCCAATCAGATTATGAAAAAGCCTTGAAGGATGGACCAGCTAGTGGTGGTGTTGCTGCAATAATAGATGAACGTGCATACATGGAGCTCTTCCTAGCAACCAGATGTGAATTTAGTATTGTTGGTCAAGAGTTCACCAAGATCGGATGGGGTTTTCTCATGCTCTCCCTCTCTGAAGTCTACAAAACAAAGTTTAACGAAGACAGAGAAGATTCATTTCACTAG 822 0.4209 MSKVWLLVLVILYCGFPSKGTSNVSTRPRPSAVNIGAILSFNSTIGRVAKVAIQAAVHDINSNATILKGTKLNISMLDTKLSTGFLGIIACLAFQPYFLHILKNGLTSQRNPLYAGEKTVSTLGRLVLIIWLFVVLILNSSYIASLTSILTVEQLSSPVKGIESLVTSNDRIGFLKGTFAENYLTEELNIPRSRLVPLNSQSDYEKALKDGPASGGVAAIIDERAYMELFLATRCEFSIVGQEFTKIGWGFLMLSLSEVYKTKFNEDREDSFH 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0824 273 SUPERFAMILY Periplasmic binding protein-like I 29 84 IPR028082 -
Ssu5g0824 273 SUPERFAMILY Periplasmic binding protein-like II 141 265 - -
Ssu5g0824 273 Pfam Ligand-gated ion channel 117 192 IPR001320 GO:0015276|GO:0016020
Ssu5g0824 273 Gene3D - 30 95 - -
Ssu5g0824 273 PANTHER GLUTAMATE RECEPTOR 116 253 - -
Ssu5g0824 273 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 12 94 - -
Ssu5g0824 273 SMART GluR_14 65 268 IPR001320 GO:0015276|GO:0016020
Ssu5g0824 273 PANTHER GLUTAMATE RECEPTOR 12 94 - -
Ssu5g0824 273 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 116 253 - -
Ssu5g0824 273 Gene3D - 150 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0824 Ssu-Chr5 21367663 21370950 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0824 5 94 Ion Channels AT3G51480 43.333 1.96e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0824 K05387 - gmx:100789442 239.195