Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0820 ATGACACGCGCGCTGAGACTCCTCCAATCCGCGGCGGCGCCACCGCCGGAGGCGGCCGCCGCCGAGTCGGACTTCGTCGTGATCCTGGCGGCGCTCCTCTGCGCCCTCGTGTGCGTGGTGGGCCTCATCGCCGTCGCGCGCTGTGCCTGGCTCCGCCGGGGACCCGTTGCCGGCGCCGGAGCCTCGCCGGCGACGCCGACCGCGACGGCCAACAAGGGCCTCAAGAAGAAAGTGGTGGACTCGCTTCCGAAGTTCACCTACATCGACGGCGACGGCAGCCGGTGCAAGTGGTTGGCCTCGTCGGAGTGCGCGATTTGCCTGACGGAGTTTGCCGCCGGCGACGAGGTCCGCGTGCTGCCGCAGTGCGGCCACGGGTTCCACGTGGCGTGCGTGGACACGTGGCTCGCGTCGCACTCCTCGTGCCCCTCGTGCCGCGCGCCCTTCGCCGTCGCGCGGTGCCAGAAGTGCGGCCATTTCCCGGCGGTGGCCGCCGCAGTCGCCGGCGAATCGGAGTCCAAGGCCGTCGGCGGCGACAATGCCGATAGCGCCGCGAATGCTAATCGCAATGTTATTATTACCAATGGTTTTAGTAATTACGGTTTCTTGCCTTGA 612 0.683 MTRALRLLQSAAAPPPEAAAAESDFVVILAALLCALVCVVGLIAVARCAWLRRGPVAGAGASPATPTATANKGLKKKVVDSLPKFTYIDGDGSRCKWLASSECAICLTEFAAGDEVRVLPQCGHGFHVACVDTWLASHSSCPSCRAPFAVARCQKCGHFPAVAAAVAGESESKAVGGDNADSAANANRNVIITNGFSNYGFLP 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0820 203 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 194 - -
Ssu5g0820 203 Pfam Ring finger domain 102 145 IPR001841 -
Ssu5g0820 203 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Ssu5g0820 203 SMART ring_2 103 144 IPR001841 -
Ssu5g0820 203 CDD RING-H2_PA-TM-RING 102 145 - -
Ssu5g0820 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 158 IPR013083 -
Ssu5g0820 203 SUPERFAMILY RING/U-box 102 150 - -
Ssu5g0820 203 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0820 Ssu-Chr5 21235851 21236462 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0820 1 156 C3H Transcription Factor Family AT1G20823 61.078 1.78e-60 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0820 - - gmx:100813341 292.737
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2144 2 77351152 77351835 Ssu5g0820 5 21235851 21236462 PCT