Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0816 ATGAAGTTTCCTCCTTTtcacatttcttttcttctggTCTCGCTAATCGCCTTCTTTTGCTTCACCCCCACCTCGGCAATTCTCAAACATCACAATGAACAACGCCACATCCACCCTGGACTTCATCGACGCTCTTCCCgatcccttctctctcttccacCTAAGGCTGCAACAACGGCACTGGTTGCGACCCTAGATGGGACTATGTATTTGGTGGACCGGTCAGAGAGTGGTTCCATGAGGGTGATATGGTCATTCTCGACAGGATCGCCAATCTACGGATCTTATCAAGCTCCGATAAAGAAGGATAACGGTAAAGAAAATGCATCTGCAGCACTAATGAGCGGGTTTGTGGAATGCGGGGATGACTGGTCATTGTACATGCACGACAAGCACTTTGGTAAAATGAGAATCTCAGAATCTATTGCAGAATATGTAGCTCATACACCTACCTGTTCAGATGATGGAGCAGTAACACTTGGATCCAAAAGAAGCACTTTGTTTGAAGTTGATGCTAAAACTGGATCAATCATTCAAATGCATGCGATGTCTGATTTTGATAATGCTTCTGCACCTTCAAATGATGGCAGGCAGGGTGTTACAAATATCCTCAACATAAAGAATAAGGATCTTACTGATCCTGTGAAGCTAAATTCACCACAGATGCTGCTTAAGATTTTTAGGACAGATTATTCTCTTCAATCTGTTGGTCCTAGCTCAGGAATAGTTTTGTGGACTATGACAGTAGCTGAATTTGAGGCTGTATTGTTATGCCAACATACCTCTTTTGATGTAGAGGATGAGTATGCTTCTGACAGTGGCCTCAATTTTGCGATGCCATACCCGTGTCAAGAGATACAACAAGTCTTCCGCCTGAAAAAGAATTTTCTGTTTGAACCTTCACAAACTGAAAGATTACTTGAGGCTGATCATGAAAATGATATGCTCTCAATGCCTAACTCAAATCTAAAGCTTCCTTCACGGCCAAATATTGATAGATTATTCAATGGTCATGATGATAGTATGATGCTTCCTCAGCCTCTTGTGGAGATTACTGTACCAGGGGAAGTTTATCTGAATAGGACAGAATCAAGATATACTGAAAGACCAAAACAGTGA 1119 0.4048 MKFPPFHISFLLVSLIAFFCFTPTSAILKHHNEQRHIHPGLHRRSSRSLLSLPPKAATTALVATLDGTMYLVDRSESGSMRVIWSFSTGSPIYGSYQAPIKKDNGKENASAALMSGFVECGDDWSLYMHDKHFGKMRISESIAEYVAHTPTCSDDGAVTLGSKRSTLFEVDAKTGSIIQMHAMSDFDNASAPSNDGRQGVTNILNIKNKDLTDPVKLNSPQMLLKIFRTDYSLQSVGPSSGIVLWTMTVAEFEAVLLCQHTSFDVEDEYASDSGLNFAMPYPCQEIQQVFRLKKNFLFEPSQTERLLEADHENDMLSMPNSNLKLPSRPNIDRLFNGHDDSMMLPQPLVEITVPGEVYLNRTESRYTERPKQ 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0816 372 PANTHER SERINE/THREONINE KINASE DOMAIN PROTEIN 22 367 - -
Ssu5g0816 372 Gene3D - 38 267 IPR015943 GO:0005515
Ssu5g0816 372 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 60 201 IPR011044 -
Ssu5g0816 372 PANTHER IRE1-RELATED 22 367 IPR045133 GO:0004521|GO:0004674|GO:0030968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0816 Ssu-Chr5 21106667 21109570 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0816 K08852 - gmx:100785904 580.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0816 5 21106667 21109570 Ssu5g0816 5 21106667 21109570 ECH
Ssu2g2148 2 77419934 77426014 Ssu5g0816 5 21106667 21109570 ECH
Ssu2g2148 2 77419934 77426014 Ssu5g0816 5 21106667 21109570 PCT