LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu5g0815	ATGGACACTATCGATAAAAGGGAAAAGCACTCGTCTTCAGAGAATGAGGATGTATTGATACAAAAGGATACTGATAGAGAAGTATGGCAGCACTTCAATCAAGTTGATGAAAGTATTGATGGACGAAGGATTGGTAAATTATTTGCTTCAAATAAAGAGATTGCTAAGGGAAGCAATGGTACCATTGTACTTGAAGGAATATATGAAGGCCGAGCAGTTGCTGTGAAACGTCTTGTCAAGGCTCATCATGATGTAGCCTATAAAGAGATCCAAAACCTTATTGTCTCTGATCGTCATCCAAACATTGTCCGATGGCACGGGGTGGAGTATGATAGCGATTTTGTTTACCTTGCTCTGGAACGTTGTACATGCAACTTAGatgatttgattcaaatttattcagATATACCAGAAAATTCTACGTTTAGGAAGGACCAAGATTTCAAATGTTTGATAAAGTCCCAAATAGAGACGGGGAAGGCTAATACACAATGTCTTTGGAAGGCAAACGGCTATCCATCTCCTCTATTATTGAAACTGATGAGGGACATTGTTTCTGGGGTTGTTCATTTGCATGAACTGGGAATAATACATCGAGATTTGAAACCACAAAATGTTCTAATAATCAAGGAAAGATCCTTATGTGCAAAGCTTTCTGATATGGGGATTAGCAAATGCCTTCTTGAAAATATGTCTTCTTTGGGTAATAATGCTACTGGTGGTGGCAGTTCAGGTTGGCAAGCACCAGAACAGCTTGCTCAAGGACGCCAAACACGGGCAGTAGATATATTTAGTTTAGGTTGTGTCCTCTTTTTCTGCATGACTGGGGGAAGGCATCCATTTGGAGAACTGGAGTTCATTCCTGAAGCCAAGGATCTTATTAGTCGATTATTAAACCCTAACCCTGATCTAAGGCCAAAGGCTACTGAGATATTGTACCATCCTTTTTTCTGGAGTTCCGAGATGAGACTTTCTTTTTTACGCGACACTAGCGACAGGGTGGAACTGGAAAATAGAGAGACTAATTCGGATCTTTTGGTAGCATTAGAAAGCATTGCCACAGTGGCCTTGGGTGGAAAATGGGATGAAAGGATGGAACCAGCTTTCATTGCTAACATCGGTTATTACCGGCGGTATAAGTTTAACAGTGTTCGAGACTTGTTGCGAGTTATGAGGAACAAACTAAATCATTATAGAGAATCGCCTCGAGAAATCCAGGAACTTGTAGGACCTGTTCCCGAAGGATTCTGCGACTACTTTGCAAGTCGATACCCAAAACTCTTGATTGAAGTTTATAAAGTTATGCTCCAATTTTGCAAGGAGGAAGAATGTTTccaaagatattttaaaaatgttgattag	1362	0.3921	MDTIDKREKHSSSENEDVLIQKDTDREVWQHFNQVDESIDGRRIGKLFASNKEIAKGSNGTIVLEGIYEGRAVAVKRLVKAHHDVAYKEIQNLIVSDRHPNIVRWHGVEYDSDFVYLALERCTCNLDDLIQIYSDIPENSTFRKDQDFKCLIKSQIETGKANTQCLWKANGYPSPLLLKLMRDIVSGVVHLHELGIIHRDLKPQNVLIIKERSLCAKLSDMGISKCLLENMSSLGNNATGGGSSGWQAPEQLAQGRQTRAVDIFSLGCVLFFCMTGGRHPFGELEFIPEAKDLISRLLNPNPDLRPKATEILYHPFFWSSEMRLSFLRDTSDRVELENRETNSDLLVALESIATVALGGKWDERMEPAFIANIGYYRRYKFNSVRDLLRVMRNKLNHYRESPREIQELVGPVPEGFCDYFASRYPKLLIEVYKVMLQFCKEEECFQRYFKNVD	453

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu5g0815	453	ProSiteProfiles	KEN domain profile.	320	451	IPR010513	GO:0004540\|GO:0006397
	Ssu5g0815	453	SMART	serkin_6	48	317	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu5g0815	453	PANTHER	IRE1-RELATED	21	449	IPR045133	GO:0004521\|GO:0004674\|GO:0030968
	Ssu5g0815	453	SUPERFAMILY	Protein kinase-like (PK-like)	44	339	IPR011009	-
	Ssu5g0815	453	PANTHER	SERINE/THREONINE KINASE DOMAIN PROTEIN	21	449	-	-
	Ssu5g0815	453	Pfam	Ribonuclease 2-5A	323	449	IPR010513	GO:0004540\|GO:0006397
	Ssu5g0815	453	SMART	PGNneu	382	436	-	-
	Ssu5g0815	453	Gene3D	Transferase(Phosphotransferase) domain 1	156	323	-	-
	Ssu5g0815	453	Gene3D	KEN domain	324	453	IPR038357	-
	Ssu5g0815	453	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	196	208	IPR008271	GO:0004672\|GO:0006468
	Ssu5g0815	453	ProSiteProfiles	Protein kinase domain profile.	48	317	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu5g0815	453	Pfam	Protein kinase domain	50	317	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu5g0815	453	Gene3D	Phosphorylase Kinase; domain 1	10	120	-	-
	Ssu5g0815	453	CDD	RNase_Ire1	321	449	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu5g0815	Ssu-Chr5	21099811	21106607	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu5g0815	72	316	MAP Kinase Kinase Kinase	AT3G06030	27.170	1.08e-21	96.3

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	IRE1	Ssu5g0815		Pkinase	4.5e-34	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu5g0815	K08852		-	gmx:100785904	833.172