Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0814 ATGATTGGAGTTTGGCTTGTGGTGTTGATGGTTCTCTCCAAAGGGTTATATTCATCTGGGGTTGTATTGGATAATTCCGCAATACctgattttgtaaatattgggGTTCTCTATTCTTTCAATACCAGTGTTGGTAGAATGGTGAAAACTGCGGTAGAAGCTGCGGTTGACGATGTAAATTCTGATCCATCTATTCTTGCTAACACTAAGTTGAAGGTCTCACTGCAAGAAGATACCAAATACAGAGGTTTTTTGAGCATTGCTGAGGGGGAAAATACAGTGAGCACTCTTGGTCGCTTTGTGCTGCTTATATGGTTATTTGTAGTTCTAATAATTAACTCAAGTTACACGGCTAGCCTGACATCAATCCTAACGGTGCATCAACTTTCTTCACCCGTTAAAGGCATTGAAAGTTTAATAAATAGCAAAGAGCCTATTGGCTACTTGCAAGGTTCGTTTACTCGAGATTATTTAATTGAGGAAATTGGTATTGATGAATCCAGACTAGTTCCTCTAAAAACACCAGAAGAAACTACAAAAGCCCTAGATAAAGGTCCCCAGAAGGGTGGTGTTGCTGCATACGTTGATGAGCGTGCTTACATAGAGCTCTTCCTTTCAAGTCGGTGTGATTTTAGTGTTGTAGGTCAGGAGTTCACCCGAAATGGTTGGGGATTTTTCTTTGAAGCCTGTAACCATGAAACAATAAAGATTAAGAGCCGCtccaagagaaagaaaatggagGGGATATCATACAGAAGCACAAGTGAGGTTGGATCATCCATCACCTCCAACAAAGGATATTCTCAGACATCATCAAACAGAATTGATTCAGCTAATGAAATCTAA 846 0.383 MIGVWLVVLMVLSKGLYSSGVVLDNSAIPDFVNIGVLYSFNTSVGRMVKTAVEAAVDDVNSDPSILANTKLKVSLQEDTKYRGFLSIAEGENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVHQLSSPVKGIESLINSKEPIGYLQGSFTRDYLIEEIGIDESRLVPLKTPEETTKALDKGPQKGGVAAYVDERAYIELFLSSRCDFSVVGQEFTRNGWGFFFEACNHETIKIKSRSKRKKMEGISYRSTSEVGSSITSNKGYSQTSSNRIDSANEI 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0814 281 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 88 227 - -
Ssu5g0814 281 Pfam Ligand-gated ion channel 89 240 IPR001320 GO:0015276|GO:0016020
Ssu5g0814 281 PANTHER GLUTAMATE RECEPTOR 10 87 - -
Ssu5g0814 281 Gene3D - 38 154 - -
Ssu5g0814 281 SUPERFAMILY Periplasmic binding protein-like II 115 228 - -
Ssu5g0814 281 PANTHER GLUTAMATE RECEPTOR 88 227 - -
Ssu5g0814 281 SUPERFAMILY Periplasmic binding protein-like I 29 94 IPR028082 -
Ssu5g0814 281 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 10 87 - -
Ssu5g0814 281 MobiDBLite consensus disorder prediction 254 281 - -
Ssu5g0814 281 SMART GluR_14 70 253 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0814 Ssu-Chr5 21091314 21095669 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0814 5 89 Ion Channels AT3G51480 41.176 1.98e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0814 K05387 - gmx:100788917 246.899