Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0813 ATGGTGAAAGGCATCACGATGGTGAAGGTGTTGCACGGGCGAATTATGGTGTCGATGGCAGTGATGGAGAAGTGGCGGAGTGATGGAGGAGTGGCAAAGGTTCTAGTGTTTTGGGGTCAAGAGAAATGCCTTCAACTTGATATGCTCGACATGAGTTTCTTGAGGTCTCACGTAAAATACAACATGAGCAAAGTTTGGCTTATTGTCTTTGTCATATTCTACGGTGGCTTTCCCTCAAAAGGCATCAGCAACGTTTCTACAAGACCAAGACCAAGTGCCGTTAACATTGGGGCAATTTTATCTTTCAACTCAACAATTGGCAGAGTGGCTAAAGTTGCCATACAAGCAGCAGTGGATGATATAAATTCCAATGCCTTCGATGCTGTGGTGGGCGACATTACCATTACTACAAACCGAACTAAGATAGTGGATTTTACACAGCCATATATTGAATCTGGGCTAGTTGTTGTGGCACCTATCAAGAAGTTGAAATCCAGTGCTTGGGCTTTCCTCACACCATTCACTCCAATGATGTGGTTTGTGACAGGAATGTTTTTCTTGGTGGTGGGAGCTGTTGTGTGGATTTTAGAACGTCGCATAAATGATGACTTTAGAGGCCCTGCTAGAAGACAATTTGTCACCATTATCTGGTTTAGCTTTTCAACCCTATTTTTTGCACATAGAGAGAAAACTGTCAGCACCCTTGGTCGTTTAGTGCTAATCATATGGCTGTTTGTGGTTTTGATACTCAACTCAAGCTATATTGCAAGCCTGACCTCCATCCTAACCGTGGAACAGCTCTCCTCCCCAGTTAAAGGAATTGAAAGCTTAGTAATAAGCAACGACCGCATAGGTTTCCTGAGGGGTTCATTTGCTGAAAATTATCTGACTGAGGAGCTCAACATACACAGGTCCAGGCTTGTTCCTCTCAATTCCCCATCAGAATATGAAAAAGCCTTGAATGATGGGCCAGCTAGTGGTGGTGTTGCTGCAATAATAGATGAACGTGCATACATGGAGCTCTTCCTAGCGACCAGATGTGAATTTGGTATTGTTGGCCAAGAGTTCACCAAGATGGGATGGGGTTTTGGCTTCCCAAGGGAATCTCCCCTAGCAATTGATATGTCAACTGCCATCCTAAAACTATCAGAAAATGGTGACCTCCAGAGAATTCACGACAAATGGCTAACAAGAAGTGCCTGCAGCTCAGAGGGTGCAAAACAAGGCATAGACCGACTGGAACTAAAAAGCTTTTGGGGTCTGTTCCTACTGAGTGGCATAGCATGCTTCATTGCTCTCCTTTGCTATGTTATTAGAATGGCCTACCGTTTTAGCAGGCACTCCAATAGTAACCTTGAAGGCTCATCACGCTCTGCTCGTCTTCGATCATTCCTTTCCTTtgtcaacgaaaaagaagggGAGGACAAATACAGGCcaaagagaaagggaaaggaGAAGTGCTCTTGTAGAAAGGTAGTGCATGAAAATGGATCTTTGGATGACTCAACTGTTCATGTCCACATTGAAAATAATGCCACTGCCTAA 1545 0.4304 MVKGITMVKVLHGRIMVSMAVMEKWRSDGGVAKVLVFWGQEKCLQLDMLDMSFLRSHVKYNMSKVWLIVFVIFYGGFPSKGISNVSTRPRPSAVNIGAILSFNSTIGRVAKVAIQAAVDDINSNAFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIKKLKSSAWAFLTPFTPMMWFVTGMFFLVVGAVVWILERRINDDFRGPARRQFVTIIWFSFSTLFFAHREKTVSTLGRLVLIIWLFVVLILNSSYIASLTSILTVEQLSSPVKGIESLVISNDRIGFLRGSFAENYLTEELNIHRSRLVPLNSPSEYEKALNDGPASGGVAAIIDERAYMELFLATRCEFGIVGQEFTKMGWGFGFPRESPLAIDMSTAILKLSENGDLQRIHDKWLTRSACSSEGAKQGIDRLELKSFWGLFLLSGIACFIALLCYVIRMAYRFSRHSNSNLEGSSRSARLRSFLSFVNEKEGEDKYRPKRKGKEKCSCRKVVHENGSLDDSTVHVHIENNATA 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0813 514 PANTHER GLUTAMATE RECEPTOR 125 513 - -
Ssu5g0813 514 PANTHER GLUTAMATE RECEPTOR 73 125 - -
Ssu5g0813 514 Pfam Bacterial extracellular solute-binding proteins, family 3 113 397 IPR001638 -
Ssu5g0813 514 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 125 513 - -
Ssu5g0813 514 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 73 125 - -
Ssu5g0813 514 Pfam Ligand-gated ion channel 398 429 IPR001320 GO:0015276|GO:0016020
Ssu5g0813 514 Gene3D - 344 403 - -
Ssu5g0813 514 SUPERFAMILY Periplasmic binding protein-like II 114 398 - -
Ssu5g0813 514 Gene3D - 94 166 - -
Ssu5g0813 514 SMART GluR_14 66 398 IPR001320 GO:0015276|GO:0016020
Ssu5g0813 514 Gene3D - 167 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0813 Ssu-Chr5 20993818 21001587 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0813 121 482 Ion Channels AT3G51480 65.940 3.36e-172 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0813 K05387 - gmx:100789442 724.931