Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0812 ATGAAAAAAGTTTGGCTTCTTGTCCTTGTGATGTTCTACCATGGCTTTCCTTCAAAAGGAATCAGCAATGTTTCTACTACAAGACCAAGTACCGTTAACATAGGGGCACTTGTGTCCTTCAATTCAACCGTTGGCAGAGTGGCTAAAGTTGCCATACAAGCAGCAGTGGATGATATAAATTCCAATGCAACGATTCTCAATGGAACTAAGCTTAATATTTCAATGCAGGACACCAAATTATCCACTGGATTCCTAGGAATCATTGACTCATTAAGATTGATGGAGAATGACACTGTGGCCATAGTTGGTCCCCAGTTCTCAGTCATGGCTCATGTGATTTCACATATTGCAAATGAGATGCAAGTGCCTCTACTTTCATTTGCAGCGACAGACCCTACACTGACTTCACTGCAGTTCCCATATTTTGTTAGGACAACACAGAGTGATCTGTATCAGATGTCTGCAGTGGCAGAAATTGTTGATCACTTTCAGTGGAGAGATGTAATAGCAATTTACATTGATGATGATCATGGAAGAAATGGGGTGGCTGCATTAGGGGATAAGCTAGCAGAGAAACGTGGTAAAATATCACATAAAGCACCATTTAGGCCTGGCAACGTTACCCAGGAAGAAATAAACAGTGCATTAGTTAAGATAGCTTTAATGGAATCAAGGGTAATAGTCCTTCACATATACCCTTCTTTTGGTCTAGAAGTGCTGAATGTGGCTCGGTCCCTTGGCATGATGGGAATTGGTTATGTGTGGTTAGCCACAGATTGGCTTTCTACAGTACTAGATTCAAATCCATCATTGTTCACAACTCAAGCCATGAATGACATCCAAGGTGTTATCACCTTGCGCATGTATACCCCCGAGtcagaaatcaaaagaaagttTAGTTCTAGGTGGAACAAACTGAGCCAAGAAAAGGATCCTGATGAGGGTCCTTTTGCATTGAACATCTTTGGCCTTTACGCCTATGACACTGTTTGGGTGCTTGCTTCTGCACTCGATGCATTTTTTAAGAGTGGGGGaactttgtcattttcaaatgaTTCAAGTCTAAACATGTTAAGGGGGGACACCCTTCACCTGGATACTATGGGGGCCTTTGTAGATGGTGGTATGTTgcttcaaaaaattttagaagtcaACAGAACTGGTTTAACAGGCCAAATGATGTTTGGTTCAGATGGAAACTTAGTGCATCCATCTTATGAAGTCATTAATGTGATAGGTACTGGAATTAGGAGGATTGGTTACTGGTCTGAAACCTCTGGCCTCCACACTGGGGAAGCTCCTAATCATTCCAATTCTAGTGAGGGACTATATGGTGTCATATGGCCTGGTCAAACAACTCAAACCCCACGTGGTTGGGTTTTTGCCAGCAATGGAAGACACTTGAGAATTGGAGTGCCACTTAGAATTAGTTACCGTGAGTTTGTGTCAAGAACTGAGGGAACTGAGATGTTTGGTGGTTATTGCATAGATGTGTTTACTGCTGCGCTCAACTTGTTGCCTTATCCTGTTCCCTTCAAGTTTGTTCCATTTGGAGATGGTAAAACCAACCCACTAAATACAAAACTTCTCAACATGATCACAGTTGGGGAGTTTGATGCTGTTGTGGGGGACATTACCATTACCACAAACCGAACTAAGATAGTAGATTTTACACAGCCATATATTGAGTCTGGGCTAGTTGTTGTGGCACCTATTAGAAAGATGAAATCCAGTGCTTGGGCTTTCCTAAGACCATTCACTCCAATGATGTGGTTTGTCACAGGAATGTTTTTCATAGTTGTGGGAGCTGTTGTGTGGATTTTAGAGCGTCGCTTAAATGATGACTTTAGAGGCCCAGCAAGAAGGCAGTTTGTGACCATTATATGGTTTAGCTTTTCAACCCTGTTTTTTGCACATAGAGAAAAAACTGTGAGCACCCTTGGTCGCTTAGTGCTAATCATATGGCTGTTTGTGGTTTTGATACTCAACTCAAGCTATATAGCAAGCCTGACCTCCATCCTAACCGTGGAACAGCTCTCTTCCCCAGTTAAGGGAATTGAAAGCTTAGCAACAAGCAGCGATCGCATTGGTTTCCTGAGTGGCTCCTTTGCTGAAAATTATCTGACAGATGAGCTCAACATACACAGATCCAGGCTTGTTCCTCTCAACTCCCCATCAGAATATGAAAAGGCCTTAAAGGATGGTCCTGCTAATGGGGGTGTCACTGCAATAATAGACGAACGTGCATACATGGAGCTGTTCCTGGCAACCAGATGTGAATACGGTATTGTTGGGCAAGAGTTCACCAAGATGGGATGGGGCTTTGCCTTCCCAAGGGACTCTCCCTTAGCAATTGACATGTCCACTGCCATCCTAAAACTATCAGAGAATGGTGACCTTCAGAGAATTCATGACAAATGGCTAACAAGAAGTGCCTGCAGCTCAGAGGGTGAAAAACAAGGCATAGACCGACTTGAGCTAAAAAGCTTTTGGGGTCTTTTCCTACTGAGTGGCATAGCATGCTTCATTGCTCTCCTTTGCTATGTTATTAGAATGGCCTACCGTTTCAGCAGACACTCCAATAGTAACCCTGAGGGCTCGTCAAACTCTGCTCGTCTTCGATCATTCTTTACCTTTGTGAATGCAAGGGAAGAGGAAGACAAAAACATGTCAAAGAGGAAACGAAACGAAAAGGGATCTAGCAGAAGGGTGGCGCATGAAGATGGATTGGATGGCTCCACTGTTGGTGTCCATATTGAGATGCCTATGGCTAACTAG 2778 0.4251 MKKVWLLVLVMFYHGFPSKGISNVSTTRPSTVNIGALVSFNSTVGRVAKVAIQAAVDDINSNATILNGTKLNISMQDTKLSTGFLGIIDSLRLMENDTVAIVGPQFSVMAHVISHIANEMQVPLLSFAATDPTLTSLQFPYFVRTTQSDLYQMSAVAEIVDHFQWRDVIAIYIDDDHGRNGVAALGDKLAEKRGKISHKAPFRPGNVTQEEINSALVKIALMESRVIVLHIYPSFGLEVLNVARSLGMMGIGYVWLATDWLSTVLDSNPSLFTTQAMNDIQGVITLRMYTPESEIKRKFSSRWNKLSQEKDPDEGPFALNIFGLYAYDTVWVLASALDAFFKSGGTLSFSNDSSLNMLRGDTLHLDTMGAFVDGGMLLQKILEVNRTGLTGQMMFGSDGNLVHPSYEVINVIGTGIRRIGYWSETSGLHTGEAPNHSNSSEGLYGVIWPGQTTQTPRGWVFASNGRHLRIGVPLRISYREFVSRTEGTEMFGGYCIDVFTAALNLLPYPVPFKFVPFGDGKTNPLNTKLLNMITVGEFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIRKMKSSAWAFLRPFTPMMWFVTGMFFIVVGAVVWILERRLNDDFRGPARRQFVTIIWFSFSTLFFAHREKTVSTLGRLVLIIWLFVVLILNSSYIASLTSILTVEQLSSPVKGIESLATSSDRIGFLSGSFAENYLTDELNIHRSRLVPLNSPSEYEKALKDGPANGGVTAIIDERAYMELFLATRCEYGIVGQEFTKMGWGFAFPRDSPLAIDMSTAILKLSENGDLQRIHDKWLTRSACSSEGEKQGIDRLELKSFWGLFLLSGIACFIALLCYVIRMAYRFSRHSNSNPEGSSNSARLRSFFTFVNAREEEDKNMSKRKRNEKGSSRRVAHEDGLDGSTVGVHIEMPMAN 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0812 925 SUPERFAMILY Periplasmic binding protein-like I 28 459 IPR028082 -
Ssu5g0812 925 Pfam Ligand-gated ion channel 810 841 IPR001320 GO:0015276|GO:0016020
Ssu5g0812 925 Gene3D - 465 578 - -
Ssu5g0812 925 Pfam Receptor family ligand binding region 50 413 IPR001828 -
Ssu5g0812 925 Gene3D - 579 711 - -
Ssu5g0812 925 Pfam Bacterial extracellular solute-binding proteins, family 3 491 809 IPR001638 -
Ssu5g0812 925 Gene3D - 50 403 - -
Ssu5g0812 925 MobiDBLite consensus disorder prediction 887 908 - -
Ssu5g0812 925 Gene3D - 148 428 - -
Ssu5g0812 925 CDD GluR_Plant 468 808 - -
Ssu5g0812 925 PIRSF IGluLR_plant 1 914 IPR017103 -
Ssu5g0812 925 PANTHER GLUTAMATE RECEPTOR 12 920 - -
Ssu5g0812 925 SUPERFAMILY Periplasmic binding protein-like II 444 810 - -
Ssu5g0812 925 Gene3D - 726 815 - -
Ssu5g0812 925 SMART GluR_14 469 810 IPR001320 GO:0015276|GO:0016020
Ssu5g0812 925 CDD PBP1_GABAb_receptor_plant 33 428 IPR044440 -
Ssu5g0812 925 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 12 920 - -
Ssu5g0812 925 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 326 338 - -
Ssu5g0812 925 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Ssu5g0812 925 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 106 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0812 Ssu-Chr5 20940683 20945323 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0812 5 902 Ion Channels AT3G51480 56.641 0.0 1072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0812 K05387 - gmx:100790502 1702.18