Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0811 ATGTCGTGTTCTTCTTCATCTGGGTCTGAAGAGGACGATGAGGGGTTCGACTCCTACCGGAAAGGAGGGTACCACGCCGTCAGAGTCGCCGATCAATTCGCCGGCGGCAGGTACATAGCGCAGAGGAAACTCGGTTGGGGTCAGTTTTCCACCGTTTGGCTTGCCTATGATACTACAACATCTGCATATGTTGCTCTCAAGATCCAGAAAAGTGCGGCCCAGTTTGTTCAGGCCGCCCTTCATGAAATTGATGTTCTTTCATCCCTTGCTGATGGTGTCGATATGGATTCAAAATGTGTTGTCCAGTTGATTGACCACTTTAAGCACACAGGTCCCAATGGTCAGCACCTTTGCATGGTGCTTGAGTTTCTTGGGGATAGCTTGCTTCGTCTAATCAAATATAACCGGTACAAAGGCCTTCCAATGAATAAAGTTAGGGAGATTTGCAAGTGCATTTTGATTGGTTTGGATTATTTGCATAGAGAACATGGTATTGTCCACACAGACCTAAAACCAGAAAATGTTCTTCTGGTTTCTACCATTGATCCTGCCAAAGACCCTGTTAGATCAGGACCCACCCCAATATTAGAGAGGCCCGAGGGAAACATAAATGGTGGAGTTACTAGTCTTATTGAGAAAAAGTTGAAAAGGAGAGCTAGGAGGGCAGTTGCTAAAATATCTGGAAGAAGTGCTTCAATAGGAGGAATTGAAGCTCCAAAGTCTGAGAGAAATATTGATGGGATTGATGTGAGATGCAAGGTGGTAGATTTTGGAAATGCTTGTTGGGCTGATAAGCAGTTTGCAGAAGAAATTCAGACAAGACAGTACAGAGCTCCTGAAGTAATACTGCAGGCTGGTTATTCCTTCTCTGTTGACATGTGGTCTTTCGCTTGTATTGCTTTTGAGCTTGCCACTGGTGATATGTTGTTTACTCCCAAGGTTGGACAAGGTTTTAGTGAGGATGAGGATCACCTCGCCCTGATGATGGAACTCCTTGGAAAGATGCCCCGGAAGATTGCTACTGCTGGAGCAAAATCCAAGGATTTCTTTGACAGACATGGGGATCTCAAAAGGATTCGAAGACTAAAGTTTTGGCCACTAAACAAGTTGTTGATCGATAGATATAAATTTCCAGAGAGCGATGCTCGTGAGTTTTCAGAGTTTCTTTTACCACTCCTCGATTTCGCACCCGAGAAGCGGCCAACTGCACAGCAGTGCCTGCAAAACCCATGGCTCAATGGCAAGGAGTCTACACCAAATGAAAAGAGAATTGAATCTAGTGTGGAGAAGGTGGATGTTGGGATGAGCAACCTTAAAATCAAGGTGGGAAAGTGA 1335 0.4494 MSCSSSSGSEEDDEGFDSYRKGGYHAVRVADQFAGGRYIAQRKLGWGQFSTVWLAYDTTTSAYVALKIQKSAAQFVQAALHEIDVLSSLADGVDMDSKCVVQLIDHFKHTGPNGQHLCMVLEFLGDSLLRLIKYNRYKGLPMNKVREICKCILIGLDYLHREHGIVHTDLKPENVLLVSTIDPAKDPVRSGPTPILERPEGNINGGVTSLIEKKLKRRARRAVAKISGRSASIGGIEAPKSERNIDGIDVRCKVVDFGNACWADKQFAEEIQTRQYRAPEVILQAGYSFSVDMWSFACIAFELATGDMLFTPKVGQGFSEDEDHLALMMELLGKMPRKIATAGAKSKDFFDRHGDLKRIRRLKFWPLNKLLIDRYKFPESDAREFSEFLLPLLDFAPEKRPTAQQCLQNPWLNGKESTPNEKRIESSVEKVDVGMSNLKIKVGK 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0811 444 Gene3D Transferase(Phosphotransferase) domain 1 92 412 - -
Ssu5g0811 444 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 5 444 - -
Ssu5g0811 444 SMART serkin_6 38 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0811 444 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Ssu5g0811 444 ProSiteProfiles Protein kinase domain profile. 38 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0811 444 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Ssu5g0811 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Ssu5g0811 444 Pfam Protein kinase domain 39 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0811 444 Pfam Protein kinase domain 251 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0811 444 SUPERFAMILY Protein kinase-like (PK-like) 32 418 IPR011009 -
Ssu5g0811 444 CDD STKc_SRPK 27 412 - -
Ssu5g0811 444 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 5 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0811 Ssu-Chr5 20891340 20895449 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0811 4 413 EF-hand Containing Proteins AT5G22840 51.509 1.75e-168 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Ssu5g0811 Pkinase 4.6e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0811 K08832 - gmx:100811724 824.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0811 5 20891340 20895449 Ssu5g0811 5 20891340 20895449 ECH
Ssu2g2153 2 77471317 77474884 Ssu5g0811 5 20891340 20895449 PCT